Evidence map›Paper›PMID 31324180›Full record

ArticleBMC veterinary research2019

Development of oligonucleotide microarray for accurate and simultaneous detection of avian respiratory viral diseases.

Qian Xiao, Liping Yan, Lu Yao, Jing Lei, Zhenwei Bi, Jianhua Hu, Yuqing Chen, An Fang, Hui Li, Yuan Li and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC veterinary research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it, 9 citations in OpenAlex.

  1. Pooled it
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  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Qian XiaoMOE Joint International Research Laboratory of Animal Health and Food Safety, Institute of Immunology, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Liping YanMOE Joint International Research Laboratory of Animal Health and Food Safety, Institute of Immunology, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China. yanliping@njau.edu.cn.ORCID http://orcid.org/0000-0002-7054-1510
Lu YaoMOE Joint International Research Laboratory of Animal Health and Food Safety, Institute of Immunology, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Jing LeiMOE Joint International Research Laboratory of Animal Health and Food Safety, Institute of Immunology, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Zhenwei BiMOE Joint International Research Laboratory of Animal Health and Food Safety, Institute of Immunology, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Jianhua HuMOE Joint International Research Laboratory of Animal Health and Food Safety, Institute of Immunology, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Yuqing ChenMOE Joint International Research Laboratory of Animal Health and Food Safety, Institute of Immunology, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
An FangMOE Joint International Research Laboratory of Animal Health and Food Safety, Institute of Immunology, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Hui LiMOE Joint International Research Laboratory of Animal Health and Food Safety, Institute of Immunology, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Yuan LiMOE Joint International Research Laboratory of Animal Health and Food Safety, Institute of Immunology, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Yan YanKey Laboratory of Animal Virology, Ministry of Agriculture, Zhejiang University, Hangzhou, 310058, People's Republic of China.
Jiyong ZhouMOE Joint International Research Laboratory of Animal Health and Food Safety, Institute of Immunology, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Nanjing Agricultural University · CNFirst Affiliated Hospital Zhejiang University · CN

Funding

Forestry Science and Technology Innovation and Promotion Project of Jiangsu Province LYKJ[2018]22Key Program of Science and Technology Planning of Guangdong Province 2017B020202010the China Agriculture Research System CARS-40-K13the National Key Research and Development Program of China 2016YFD0501600the Natural Science Foundation of Jiangsu Province BK20181321, BK20161452
6 · The paper itself

Abstract

backgroundAvian influenza virus (AIV), infectious bronchitis virus (IBV), and Newcastle disease virus (NDV) are important avian pathogens that can cause enormous economic loss on the poultry industry. Different respiratory etiological agents may induce similar clinical signs that make differential diagnosis difficult. Importantly, AIV brings about severe threat to human public health. Therefore, a novel method that can distinguish these viruses quickly and simultaneously is urgently needed.

resultsIn this study, an oligonucleotide microarray system was developed. AIV, including H5, H7, and H9 subtypes; NDV; and IBV were simultaneously detected and differentiated on a microarray. Three probes specific for AIV, NDV, and IBV, as well as three other probes for differentiating H5, H7, and H9 of AIV, were first designed and jet-printed to predetermined locations of initiator-integrated poly(dimethylsiloxane) for the synchronous detection of the six pathogens. The marked multiplex reverse transcription polymerase chain reaction (PCR) products were hybridized with the specific probes, and the results of hybridization were read directly with the naked eyes. No cross-reaction was observed with 10 other subtypes of AIV and infectious bursal disease virus, indicating that the oligonucleotide microarray assay was highly specific. The sensitivity of the method was at least 100 times higher than that of the conventional PCR, and the detection limit of NDV, AIV, H5, H7, and H9 can reach 0.1 EID

conclusionsWe have successfully developed an approach to differentiate AIV, NDV, IBV, H5, H7, and H9 subtypes of AIV using oligonucleotide microarray. The microarray is an accurate, high-throughput, and relatively simple method for the rapid detection of avian respiratory viral diseases. It can be used for the epidemiological surveillance and diagnosis of AIV, IBV, and NDV.

Indexed as

AnimalsCoronavirus InfectionsInfectious bronchitis virusInfectious bursal disease virusInfluenza A virusInfluenza in BirdsMultiplex Polymerase Chain ReactionNewcastle DiseaseNewcastle disease virusOligonucleotide Array Sequence AnalysisPoultryPoultry DiseasesSensitivity and SpecificityAvian influenza virusInfectious bronchitis virusNewcastle disease virusOligonucleotide microarray

Identifiers

PMID31324180
PMCPMC6642548
OpenAlexW2962921916

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.