Evidence map›Paper›PMID 31321562›Full record

ArticleRice (New York, N.Y.)2019

Whole-Genome Sequencing Identifies a Rice Grain Shape Mutant, gs9-1.

Liangrong Jiang, Guotian Li, Mawsheng Chern, Rashmi Jain, Nhan T Pham, Joel A Martin, Wendy S Schackwitz, Juan Zhao, Deling Ruan, Rongyu Huang and 2 more

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Rice (New York, N.Y.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Liangrong JiangXiamen Plant Genetics Key Laboratory, School of Life Sciences, Xiamen University, Xiamen, 361102, People's Republic of China. lrjiang108@xmu.edu.cn.ORCID http://orcid.org/0000-0001-7294-0518
Guotian LiDepartment of Plant Pathology and the Genome Center, University of California, Davis, CA, 95616, USA.
Mawsheng ChernDepartment of Plant Pathology and the Genome Center, University of California, Davis, CA, 95616, USA.
Rashmi JainDepartment of Plant Pathology and the Genome Center, University of California, Davis, CA, 95616, USA.
Nhan T PhamDepartment of Plant Pathology and the Genome Center, University of California, Davis, CA, 95616, USA.
Joel A MartinU.S. Department of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.
Wendy S SchackwitzU.S. Department of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA.
Juan ZhaoState Key Laboratory of Agricultural Microbiology and College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, Hubei, China.
Deling RuanDepartment of Plant Pathology and the Genome Center, University of California, Davis, CA, 95616, USA.
Rongyu HuangXiamen Plant Genetics Key Laboratory, School of Life Sciences, Xiamen University, Xiamen, 361102, People's Republic of China.
Jingsheng ZhengXiamen Plant Genetics Key Laboratory, School of Life Sciences, Xiamen University, Xiamen, 361102, People's Republic of China.
Pamela C RonaldDepartment of Plant Pathology and the Genome Center, University of California, Davis, CA, 95616, USA. pcronald@ucdavis.edu.
Lawrence Berkeley National Laboratory · USJoint Genome Institute · USXiamen University · CNHuazhong Agricultural University · CN

Funding

Office of the Vice Chancellor for Research, University of Illinois at Urbana-Champaign (US) DE-AC02-05CH11231the State Key Laboratory of Rice Biology of China 160104
6 · The paper itself

Abstract

backgroundBreeding for genes controlling key agronomic traits is an important goal of rice genetic improvement. To gain insight into genes controlling grain morphology, we screened M

resultsIn this study, we isolated a mutant, named fast-neutron (FN) 60-4, which exhibits a significant reduction in grain size. We crossed FN60-4 with the parental line Kitaake and analyzed the resulting backcross population. Segregation analysis of 113 lines from the BC

conclusionsIn this study, we isolated a mutant, which exhibits altered grain shape and identified the mutated gene, gs9-1. Our study reveals that gs9-1 is a semi-dominant gene that carries a two-amino acid mutation. gs9-1 is allelic to the BC12/GDD1/MTD1 gene involved in GA biosynthesis. These results demonstrate the efficiency and convenience of cloning genes from the whole-genome sequenced Kitaake mutant population to advance investigations into genes controlling key agronomic traits in rice.

Indexed as

Fast-neutron-induced mutant populationGrain shapeKitaake mutant databaseOryza sativa L.Whole-genome sequencing

Identifiers

PMID31321562
PMCPMC6639446
OpenAlexW2961717885

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.