ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2019
Development of an Axiom Sugarcane100K SNP array for genetic map construction and QTL identification.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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Who cites it
29 citing papers in PubMed.
- Multiomic insights into sucrose accumulation in sugarcane.Plant molecular biology · 2025Article
- Genome analyses and breeding of polyploid crops.Nature plants · 2025Review
- Genetic analysis of yield components in buckwheat using high-throughput sequencing analysis and wild resource populations.Physiology and molecular biology of plants : an international journal of functional plant biology · 2024Article
- Identification of candidate single-nucleotide polymorphisms (SNPs) and genes associated with sugarcane leaf scald disease.Scientific reports · 2024Article
- Use of continuous genotypes for genomic prediction in sugarcane.The plant genome · 2024Article
- Sugarcane breeding: a fantastic past and promising future driven by technology and methods.Frontiers in plant science · 2024Article
- A multiplexed plant-animal SNP array for selective breeding and species conservation applications.G3 (Bethesda, Md.) · 2023Article
- Evaluation of a Sugarcane (Plants (Basel, Switzerland) · 2023Article
- Mapping of QTLs and Screening Candidate Genes Associated with the Ability of Sugarcane Tillering and Ratooning.International journal of molecular sciences · 2023Article
- Identification of QTLs and critical genes related to sugarcane mosaic disease resistance.Frontiers in plant science · 2023Article
- Evaluation of sugarcane promising clones based on the morphophysiological traits developed from fuzz.PeerJ · 2023Article
- A SNP variation in the Sucrose synthase (PeerJ · 2023Article
- Assessing the genetic integrity of sugarcane germplasm in the USDA-ARS National Plant Germplasm System collection using single-dose SNP markers.Frontiers in plant science · 2023Article
- Article
- An autopolyploid-suitable polyBSA-seq strategy for screening candidate genetic markers linked to leaf blight resistance in sugarcane.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Recent Advances in Sugarcane Genomics, Physiology, and Phenomics for Superior Agronomic Traits.Frontiers in genetics · 2022Review
- Identification and fine-mapping of a major QTL (Frontiers in plant science · 2022Article
- Experimental evaluation of genomic selection prediction for rust resistance in sugarcane.The plant genome · 2021Article
- A linkage disequilibrium-based approach to position unmapped SNPs in crop species.BMC genomics · 2021Article
- Review
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Authors and funding
9 authors.
Funding
Abstract
key messageAn Axiom Sugarcane100K SNP array has been designed and successfully utilized to construct the sugarcane genetic map and to identify the QTLs associated with SCYLV resistance. To accelerate genetic studies in sugarcane, an Axiom Sugarcane100K single-nucleotide polymorphism (SNP) array was designed and customized in this study. Target enrichment sequencing 300 sugarcane accessions selected from the world collection of sugarcane and related grass species yielded more than four million SNPs, from which a total of 31,449 single-dose (SD) SNPs and 68,648 low-dosage (33,277 SD and 35,371 double dose) SNPs from two datasets, respectively, were selected and tiled on Affymetrix Axiom SNP array. Most of selected SNPs (91.77%) were located within genic regions (12,935 genes), with an average of 7.1 SNPs/gene according to sorghum gene models. This array was used to genotype 469 sugarcane clones, including one F
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