ArticleMicrobiology resource announcements2019
T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees.
Article in Microbiology resource announcements, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.
What it found
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The trial behind it
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Who cites it
33 citing papers in PubMed.
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- Rapid Radiations Outweigh Reticulations During the Evolution of a 750-Million-Year-Old Lineage of Cyanobacteria.Molecular biology and evolution · 2025Article
- A Reference DNA Barcode Library for UK Fungi associated with Bark and Ambrosia Beetles.Scientific data · 2025Article
- Environmental and host plant effects on taxonomic and phylogenetic diversity of root fungal endophytes.FEMS microbiology letters · 2025Article
- A pangenome analysis reveals the center of origin and evolutionary history of Phytophthora infestans and 1c clade species.PloS one · 2025Article
- Host specialization and spatial divergence of bacteria associated with Peltigera lichens promote landscape gamma diversity.Environmental microbiome · 2024Article
- Systematic revision of species ofMycoKeys · 2024Article
- High species richness in the lichen genusPersoonia · 2023Article
- First Whole Genome Sequence and Flow Cytometry Genome Size Data for the Lichen-Forming Fungus Ramalina farinacea (Ascomycota).Genome biology and evolution · 2023Article
- High Andean Steppes of Southern Chile Contain Little-ExploredJournal of fungi (Basel, Switzerland) · 2023Article
- Tapping Culture Collections for Fungal Endophytes: First Genome Assemblies for Three Genera and Five Species in the Ascomycota.Genome biology and evolution · 2023Article
- Cassava begomovirus species diversity changes during plant vegetative cycles.Frontiers in microbiology · 2023Article
- Cryptic functional diversity within a grass mycobiome.PloS one · 2023Article
- Article
- Description and Genome Characterization of Three Novel Fungal Strains Isolated from Mars 2020 Mission-Associated Spacecraft Assembly Facility Surfaces-Recommendations for Two New Genera and One Species.Journal of fungi (Basel, Switzerland) · 2022Article
- Communities of endophytic fungi in a Puerto Rican rainforest vary along a gradient of disturbance due to Hurricane Maria.Ecology and evolution · 2022Article
- Two new species ofFungal systematics and evolution · 2022Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
8 authors.
Funding
Abstract
The Tree-Based Alignment Selector (T-BAS) toolkit combines phylogenetic-based placement of DNA sequences with alignment and specimen metadata visualization tools in an integrative pipeline for analyzing microbial biodiversity. The release of T-BAS version 2.1 makes available reference phylogenies, supports multilocus sequence placements and permits uploading and downloading trees, alignments, and specimen metadata.
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.