Evidence map›Paper›PMID 31319813›Full record

ArticleBMC plant biology2019

Functional characterization of genes mediating cell wall metabolism and responses to plant cell wall integrity impairment.

Timo Engelsdorf, Lars Kjaer, Nora Gigli-Bisceglia, Lauri Vaahtera, Stefan Bauer, Eva Miedes, Alexandra Wormit, Lucinda James, Issariya Chairam, Antonio Molina and 1 more

Erratum issuedAbstract read
In one paragraph

Article in BMC plant biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  14. Review
  15. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Timo EngelsdorfInstitute for Biology, Faculty of Natural Sciences, Norwegian University of Science and Technology, 5 Høgskoleringen, 7491, Trondheim, Norway.
Lars KjaerDivision of Cell and Molecular Biology, Department of Life Sciences, Imperial College London, Sir Alexander Fleming Building, South Kensington Campus, London, SW72AZ, UK.
Nora Gigli-BiscegliaInstitute for Biology, Faculty of Natural Sciences, Norwegian University of Science and Technology, 5 Høgskoleringen, 7491, Trondheim, Norway.
Lauri VaahteraInstitute for Biology, Faculty of Natural Sciences, Norwegian University of Science and Technology, 5 Høgskoleringen, 7491, Trondheim, Norway.
Stefan BauerEnergy Biosciences Institute, University of California, 120A Energy Biosciences Building, 2151 Berkeley Way, MC 5230, Berkeley, CA, 94720-5230, USA.
Eva MiedesCentro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM)- Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus de Montegancedo- UPM, Pozuelo de Alarcón, 28223, Madrid, Spain.
Alexandra WormitDivision of Cell and Molecular Biology, Department of Life Sciences, Imperial College London, Sir Alexander Fleming Building, South Kensington Campus, London, SW72AZ, UK.
Lucinda JamesDivision of Cell and Molecular Biology, Department of Life Sciences, Imperial College London, Sir Alexander Fleming Building, South Kensington Campus, London, SW72AZ, UK.
Issariya ChairamDivision of Cell and Molecular Biology, Department of Life Sciences, Imperial College London, Sir Alexander Fleming Building, South Kensington Campus, London, SW72AZ, UK.
Antonio MolinaCentro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM)- Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus de Montegancedo- UPM, Pozuelo de Alarcón, 28223, Madrid, Spain.
Thorsten HamannInstitute for Biology, Faculty of Natural Sciences, Norwegian University of Science and Technology, 5 Høgskoleringen, 7491, Trondheim, Norway. Thorsten.hamann@ntnu.no.ORCID http://orcid.org/0000-0001-8460-5151

Funding

Deutsche Forschungsgemeinschaft EN 1071/1-1EEA Grants (Czech republic) CYTOWALLGatsby Charitable Foundation adhoc fundsH2020 Marie Skłodowska-Curie Actions SUGAR OSMO SIGNALLINGMINECO BIO2015-64077-RMinistry of Science and Technology of Thailand NAPeder Sather Center for Advanced Study NAporter institute NA
6 · The paper itself

Abstract

backgroundPlant cell walls participate in all plant-environment interactions. Maintaining cell wall integrity (CWI) during these interactions is essential. This realization led to increased interest in CWI and resulted in knowledge regarding early perception and signalling mechanisms active during CWI maintenance. By contrast, knowledge regarding processes mediating changes in cell wall metabolism upon CWI impairment is very limited.

resultsTo identify genes involved and to investigate their contributions to the processes we selected 23 genes with altered expression in response to CWI impairment and characterized the impact of T-DNA insertions in these genes on cell wall composition using Fourier-Transform Infrared Spectroscopy (FTIR) in Arabidopsis thaliana seedlings. Insertions in 14 genes led to cell wall phenotypes detectable by FTIR. A detailed analysis of four genes found that their altered expression upon CWI impairment is dependent on THE1 activity, a key component of CWI maintenance. Phenotypic characterizations of insertion lines suggest that the four genes are required for particular aspects of CWI maintenance, cell wall composition or resistance to Plectosphaerella cucumerina infection in adult plants.

conclusionTaken together, the results implicate the genes in responses to CWI impairment, cell wall metabolism and/or pathogen defence, thus identifying new molecular components and processes relevant for CWI maintenance.

Indexed as

ArabidopsisAscomycotaCell WallDisease ResistanceGene Expression ProfilingGene Expression Regulation, PlantGene Knockdown TechniquesGenes, PlantHost-Pathogen InteractionsPlant DiseasesSeedlingsSpectroscopy, Fourier Transform InfraredBioenergy productionCell wallCell wall integrityCell wall metabolismCell wall signallingPlant pathogen-interaction

Identifiers

PMID31319813
PMCPMC6637594

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.