Evidence map›Paper›PMID 31319545›Full record

ArticleNutrients2019

Basal Diet Determined Long-Term Composition of the Gut Microbiome and Mouse Phenotype to a Greater Extent than Fecal Microbiome Transfer from Lean or Obese Human Donors.

Daphne M Rodriguez, Abby D Benninghoff, Niklas D J Aardema, Sumira Phatak, Korry J Hintze

Abstract read
In one paragraph

Article in Nutrients, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Understanding the gut microbiota and sarcopenia: a systematic review.Journal of cachexia, sarcopenia and muscle · 2021
    Pooled it
  2. GGut microbes · 2025
    Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. KOMB: K-core based de novo characterization of copy number variation in microbiomes.Computational and structural biotechnology journal · 2022
    Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Cells · 2020
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Daphne M RodriguezDepartment of Animal, Dairy and Veterinary Sciences, Utah State University, Logan, UT 84322, USA.
Abby D BenninghoffDepartment of Animal, Dairy and Veterinary Sciences, Utah State University, Logan, UT 84322, USA. abby.benninghoff@usu.edu.
Niklas D J AardemaDepartment of Nutrition, Dietetics and Food Sciences, Utah State University, Logan, UT 84322, USA.
Sumira PhatakDepartment of Animal, Dairy and Veterinary Sciences, Utah State University, Logan, UT 84322, USA.ORCID 0000-0002-2068-699X
Korry J HintzeUSTAR Applied Nutrition Research, Utah State University, Logan, UT 84322, USA. korry.hintze@usu.edu.

Funding

Utah Agricultural Experiment Station A34029 FY15 UAES Grant
6 · The paper itself

Abstract

The Western dietary pattern can alter the gut microbiome and cause obesity and metabolic disorders. To examine the interactions between diet, the microbiome, and obesity, we transplanted gut microbiota from lean or obese human donors into mice fed one of three diets for 22 weeks: (1) a control AIN93G diet; (2) the total Western diet (TWD), which mimics the American diet; or (3) a 45% high-fat diet-induced obesity (DIO) diet. We hypothesized that a fecal microbiome transfer (FMT) from obese donors would lead to an obese phenotype and aberrant glucose metabolism in recipient mice that would be exacerbated by consumption of the TWD or DIO diets. Prior to the FMT, the native microbiome was depleted using an established broad-spectrum antibiotic protocol. Interestingly, the human donor body type microbiome did not significantly affect final body weight or body composition in mice fed any of the experimental diets. Beta diversity analysis and linear discriminant analysis with effect size (LEfSe) showed that mice that received an FMT from obese donors had a significantly different microbiome compared to mice that received an FMT from lean donors. However, after 22 weeks, diet influenced the microbiome composition irrespective of donor body type, suggesting that diet is a key variable in the shaping of the gut microbiome after FMT.

Indexed as

DietGastrointestinal MicrobiomeAnimal FeedAnimalsBacteriaBlood GlucoseBody CompositionBody Fat DistributionCecumFecesGlucose Tolerance TestHumansLiverMaleMiceObesityBlood Glucosefecal microbiome transfergut microbiomeobesitywestern diet

Identifiers

PMID31319545
PMCPMC6682898

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.