Evidence map›Paper›PMID 31319543›Full record

ArticleBiomolecules2019

CoCUN, a Novel Ubiquitin Binding Domain Identified in N4BP1.

Ridvan Nepravishta, Federica Ferrentino, Walter Mandaliti, Anna Mattioni, Janine Weber, Simona Polo, Luisa Castagnoli, Gianni Cesareni, Maurizio Paci, Elena Santonico

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Biomolecules, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 19 citations in OpenAlex.

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  8. Molecular Mechanisms of DUBs Regulation in Signaling and Disease.International journal of molecular sciences · 2021
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Ridvan NepravishtaSchool of Pharmacy East Anglia, University of Norwich, Norwich NR4 7TJ, UK.ORCID 0000-0002-0051-762X
Federica FerrentinoDepartment of Biology, University of Tor Vergata, 00133 Rome, Italy. Cesareni@uniroma2.it (G.C.).
Walter MandalitiDepartment of Chemical Sciences and Technologies, Tor Vergata University, 00133 Rome, Italy.
Anna MattioniDepartment of Biology, University of Tor Vergata, 00133 Rome, Italy. Cesareni@uniroma2.it (G.C.).
Janine WeberIFOM, The FIRC Institute for Molecular Oncology, 20139 Milan, Italy.
Simona PoloIFOM, The FIRC Institute for Molecular Oncology, 20139 Milan, Italy.
Luisa CastagnoliDepartment of Biology, University of Tor Vergata, 00133 Rome, Italy. Cesareni@uniroma2.it (G.C.).ORCID 0000-0001-5283-8671
Gianni CesareniDepartment of Biology, University of Tor Vergata, 00133 Rome, Italy. Cesareni@uniroma2.it (G.C.).
Maurizio PaciDepartment of Chemical Sciences and Technologies, Tor Vergata University, 00133 Rome, Italy.ORCID 0000-0002-3358-7018
Elena SantonicoDepartment of Biology, University of Tor Vergata, 00133 Rome, Italy. Cesareni@uniroma2.it (G.C.).
University of Rome Tor Vergata · ITIFOM · ITUniversity of East Anglia · GBUniversity of Milan · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ubiquitin binding domains (UBDs) are modular elements that bind non-covalently to ubiquitin and act as downstream effectors and amplifiers of the ubiquitination signal. With few exceptions, UBDs recognize the hydrophobic path centered on Ile44, including residues Leu8, Ile44, His68, and Val70. A variety of different orientations, which can be attributed to specific contacts between each UBD and surface residues surrounding the hydrophobic patch, specify how each class of UBD specifically contacts ubiquitin. Here, we describe the structural model of a novel ubiquitin-binding domain that we identified in NEDD4 binding protein 1 (N4BP1). By performing protein sequence analysis, mutagenesis, and nuclear magnetic resonance (NMR) spectroscopy of the

Indexed as

Amino Acid SequenceComputational BiologyHumansMagnetic Resonance SpectroscopyNuclear ProteinsProtein BindingProtein Structure, TertiaryRNA-Binding ProteinsUbiquitinUbiquitinationN4BP1 protein, humanNuclear ProteinsRNA-Binding ProteinsUbiquitincullin binding domain associating with NEDD8 (CUBAN)KH And NYN domain containing (KHNYN)neural precursor cell expressed developmentally downregulated gene 8 (NEDD8)nuclear magnetic resonance spectroscopyubiquitin-binding domains (UBDs)

Identifiers

PMID31319543
PMCPMC6681339
OpenAlexW2959675106

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.