Evidence map›Paper›PMID 31319517›Full record

ArticleMetabolites2019

Metabolomics Analytics Workflow for Epidemiological Research: Perspectives from the Consortium of Metabolomics Studies (COMETS).

Mary C Playdon, Amit D Joshi, Fred K Tabung, Susan Cheng, Mir Henglin, Andy Kim, Tengda Lin, Eline H van Roekel, Jiaqi Huang, Jan Krumsiek and 14 more

Registry-linked trialAbstract read
In one paragraph

Article in Metabolites, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT02328677 (ColoCare Transdisciplinary Research in Colorectal Cancer Prognosis), which is not on this map. Cited by 29 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02328677 recruitingnot on this map

ColoCare Transdisciplinary Research in Colorectal Cancer Prognosis

TypeobservationalSponsorUniversity of UtahRan2007 to 2030Enrolled5,000ConditionsColorectal Cancer
3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. A Five-Plasma Protein-Based Algorithm for Predicting Incident CKD in Type 2 Diabetes.Journal of the American Society of Nephrology : JASN · 2026
    Article
  4. Article
  5. Leveraging data-driven insights for esophageal and gastric cancer diagnosis.BMC medical informatics and decision making · 2025
    Article
  6. Article
  7. Application of Metabolomics across the Spectrum of Pulmonary and Critical Care Medicine.American journal of respiratory cell and molecular biology · 2024
    Review
  8. Review
  9. Article
  10. Article
  11. Characteristics of Cancer Epidemiology Studies That Employ Metabolomics: A Scoping Review.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2023
    Article
  12. An epidemiological introduction to human metabolomic investigations.Trends in endocrinology and metabolism: TEM · 2023
    Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Mary C PlaydonDepartment of Nutrition and Integrative Physiology, College of Health, University of Utah, Salt Lake City, UT 84112, USA. mary.playdon@hci.utah.edu.
Amit D JoshiClinical and Translational Epidemiology Unit, Mongan Institute, Massachusetts General Hospital, Boston, MA 02114, USA.
Fred K TabungDivision of Medical Oncology, Department of Internal Medicine, The Ohio State University College of Medicine, Columbus, OH 43210, USA.ORCID 0000-0001-8193-7150
Susan ChengSmidt Heart Institute, Cedars-Sinai Medical Center, Los Angeles, CA 90048, USA.
Mir HenglinCardiovascular Division, Brigham and Women's Hospital, Boston, MA 02115, USA.
Andy KimCardiovascular Division, Brigham and Women's Hospital, Boston, MA 02115, USA.
Tengda LinDivision of Cancer Population Sciences, Huntsman Cancer Institute, Salt Lake City, UT 84112, USA.
Eline H van RoekelDepartment of Epidemiology, GROW School for Oncology and Developmental Biology, Maastricht University, 6200 MD Maastricht, The Netherlands.ORCID 0000-0002-9402-2029
Jiaqi HuangDivision of Cancer Epidemiology and Genetics, Metabolic Epidemiology Branch, National Cancer Institute, Rockville, MD 20850, USA.
Jan KrumsiekInstitute for Computational Biomedicine, Englander Institute for Precision Medicine, Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY 10021, USA.
Ying WangBehavioral and Epidemiology Research Group, American Cancer Society, Atlanta, GA 30303, USA.
Ewy MathéCollege of Medicine, Department of Biomedical Informatics, The Ohio State University, Columbus, OH 43210, USA.ORCID 0000-0003-4491-8107
Marinella TemprosaDepartment of Epidemiology and Biostatistics, Milken Institute School of Public Health, George Washington University, Washington, DC 20052, USA.
Steven MooreDivision of Cancer Epidemiology and Genetics, Metabolic Epidemiology Branch, National Cancer Institute, Rockville, MD 20850, USA.
Bo ChawesCOPSAC, Copenhagen Prospective Studies on Asthma in Childhood, Herlev and Gentofte Hospital, University of Copenhagen, 1165 Copenhagen, Denmark.ORCID 0000-0001-6846-6243
A Heather EliassenChanning Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA.
Andrea GsurInstitute of Cancer Research, Department of Medicine, Medical University of Vienna, 1090 Vienna, Austria.
Marc J GunterSection of Nutrition and Metabolism, International Agency for Research on Cancer, World Health Organization, 69008 Lyon, France.
Sei HaradaDepartment of Preventive Medicine and Public Health, Keio University School of Medicine, Tokyo 160-8582, Japan.
Claudia LangenbergMRC Epidemiology Unit, Public Health, University of Cambridge, Cambridge CB2 1 TN, UK.
Matej OresicTurku Centre for Biotechnology, University of Turku, 20500 Turku, Finland.ORCID 0000-0002-2856-9165
Wei PerngDepartment of Epidemiology, Colorado School of Public Health, University of Colorado Denver, Anschutz Medical Campus, Aurora, CO 80045, USA.
Wei Jie SeowSaw Swee Hock School of Public Health, National University of Singapore and National University Health System, Singapore 117549, Singapore.
Oana A ZeleznikChanning Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0002-8705-1163

Funding

Physical Activity, Energy Balance, and CancerZIACP010197 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI ALBANES, DEMETRIUS · 2009 to 2025
$17.5M
Medical Research Council MC_UU_12015/1World Health Organization 001
6 · The paper itself

Abstract

The application of metabolomics technology to epidemiological studies is emerging as a new approach to elucidate disease etiology and for biomarker discovery. However, analysis of metabolomics data is complex and there is an urgent need for the standardization of analysis workflow and reporting of study findings. To inform the development of such guidelines, we conducted a survey of 47 cohort representatives from the Consortium of Metabolomics Studies (COMETS) to gain insights into the current strategies and procedures used for analyzing metabolomics data in epidemiological studies worldwide. The results indicated a variety of applied analytical strategies, from biospecimen and data pre-processing and quality control to statistical analysis and reporting of study findings. These strategies included methods commonly used within the metabolomics community and applied in epidemiological research, as well as novel approaches to pre-processing pipelines and data analysis. To help with these discrepancies, we propose use of open-source initiatives such as the online web-based tool COMETS Analytics, which includes helpful tools to guide analytical workflow and the standardized reporting of findings from metabolomics analyses within epidemiological studies. Ultimately, this will improve the quality of statistical analyses, research findings, and study reproducibility.

Indexed as

analytical methodsdata analysisepidemiologymetabolomicspre-processingreportingstatistical analysis

Identifiers

PMID31319517
PMCPMC6681081

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.