Evidence map›Paper›PMID 31318989›Full record

ArticleMedical physics2019

Automatic large quantity landmark pairs detection in 4DCT lung images.

Yabo Fu, Xue Wu, Allan M Thomas, Harold H Li, Deshan Yang

Open access · greenAbstract read
In one paragraph

Article in Medical physics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

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  9. Deep learning in medical image registration: a review.Physics in medicine and biology · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Yabo FuDepartment of Radiation Oncology, Washington University in Saint Louis, St. Louis, MO, USA.
Xue WuDepartment of Radiation Oncology, Washington University in Saint Louis, St. Louis, MO, USA.
Allan M ThomasDepartment of Radiation Oncology, Washington University in Saint Louis, St. Louis, MO, USA.
Harold H LiDepartment of Radiation Oncology, Washington University in Saint Louis, St. Louis, MO, USA.
Deshan YangDepartment of Radiation Oncology, Washington University in Saint Louis, St. Louis, MO, USA.
Washington University in St. Louis · US

Funding

Agency for Healthcare Research and Quality R01-HS022888AHRQ HHS R01 HS022888
6 · The paper itself

Abstract

purposeTo automatically and precisely detect a large quantity of landmark pairs between two lung computed tomography (CT) images to support evaluation of deformable image registration (DIR). We expect that the generated landmark pairs will significantly augment the current lung CT benchmark datasets in both quantity and positional accuracy.

methodsA large number of landmark pairs were detected within the lung between the end-exhalation (EE) and end-inhalation (EI) phases of the lung four-dimensional computed tomography (4DCT) datasets. Thousands of landmarks were detected by applying the Harris-Stephens corner detection algorithm on the probability maps of the lung vasculature tree. A parametric image registration method (pTVreg) was used to establish initial landmark correspondence by registering the images at EE and EI phases. A multi-stream pseudo-siamese (MSPS) network was then developed to further improve the landmark pair positional accuracy by directly predicting three-dimensional (3D) shifts to optimally align the landmarks in EE to their counterparts in EI. Positional accuracies of the detected landmark pairs were evaluated using both digital phantoms and publicly available landmark pairs.

resultsDense sets of landmark pairs were detected for 10 4DCT lung datasets, with an average of 1886 landmark pairs per case. The mean and standard deviation of target registration error (TRE) were 0.47 ± 0.45 mm with 98% of landmark pairs having a TRE smaller than 2 mm for 10 digital phantom cases. Tests using 300 manually labeled landmark pairs in 10 lung 4DCT benchmark datasets (DIRLAB) produced TRE results of 0.73 ± 0.53 mm with 97% of landmark pairs having a TRE smaller than 2 mm.

conclusionA new method was developed to automatically and precisely detect a large quantity of landmark pairs between lung CT image pairs. The detected landmark pairs could be used as benchmark datasets for more accurate and informative quantitative evaluation of DIR algorithms.

Indexed as

Fiducial MarkersAutomationFour-Dimensional Computed TomographyHumansImage Processing, Computer-AssistedLungMovementRespirationDeformable image registrationmedical image processing

Identifiers

PMID31318989
PMCPMC8311742
OpenAlexW2962728332

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.