Evidence map›Paper›PMID 31318971›Full record

ArticleNucleic acids research2019

Single-molecule detection of deoxyribonucleoside triphosphates in microdroplets.

Boris Breiner, Kerr Johnson, Magdalena Stolarek, Ana-Luisa Silva, Aurel Negrea, Neil M Bell, Tom H Isaac, Mark Dethlefsen, Jasmin Chana, Lindsey A Ibbotson and 20 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors.

Boris BreinerBase4 Innovation Ltd, Broers Building, 21 JJ Thomson Avenue, Cambridge CB3 0FA, UK.
Kerr JohnsonBase4 Innovation Ltd, Broers Building, 21 JJ Thomson Avenue, Cambridge CB3 0FA, UK.
Magdalena StolarekBase4 Innovation Ltd, Broers Building, 21 JJ Thomson Avenue, Cambridge CB3 0FA, UK.
Ana-Luisa SilvaBase4 Innovation Ltd, Broers Building, 21 JJ Thomson Avenue, Cambridge CB3 0FA, UK.
Aurel NegreaBase4 Innovation Ltd, Broers Building, 21 JJ Thomson Avenue, Cambridge CB3 0FA, UK.
Neil M BellBase4 Innovation Ltd, Broers Building, 21 JJ Thomson Avenue, Cambridge CB3 0FA, UK.
Tom H IsaacBase4 Innovation Ltd, Broers Building, 21 JJ Thomson Avenue, Cambridge CB3 0FA, UK.
Mark DethlefsenBase4 Innovation Ltd, Broers Building, 21 JJ Thomson Avenue, Cambridge CB3 0FA, UK.
Jasmin ChanaBase4 Innovation Ltd, Broers Building, 21 JJ Thomson Avenue, Cambridge CB3 0FA, UK.
Lindsey A IbbotsonBase4 Innovation Ltd, Broers Building, 21 JJ Thomson Avenue, Cambridge CB3 0FA, UK.
Rebecca N PalmerBase4 Innovation Ltd, Broers Building, 21 JJ Thomson Avenue, Cambridge CB3 0FA, UK.
James BushBase4 Innovation Ltd, Broers Building, 21 JJ Thomson Avenue, Cambridge CB3 0FA, UK.
Alexander J DunningBase4 Innovation Ltd, Broers Building, 21 JJ Thomson Avenue, Cambridge CB3 0FA, UK.
David M LoveBase4 Innovation Ltd, Broers Building, 21 JJ Thomson Avenue, Cambridge CB3 0FA, UK.
Olympia PachoumiBase4 Innovation Ltd, Broers Building, 21 JJ Thomson Avenue, Cambridge CB3 0FA, UK.
Douglas J KellyBase4 Innovation Ltd, Broers Building, 21 JJ Thomson Avenue, Cambridge CB3 0FA, UK.
Aya ShibaharaBase4 Innovation Ltd, Broers Building, 21 JJ Thomson Avenue, Cambridge CB3 0FA, UK.
Mei WuBase4 Innovation Ltd, Broers Building, 21 JJ Thomson Avenue, Cambridge CB3 0FA, UK.
Maciej SosnaBase4 Innovation Ltd, Broers Building, 21 JJ Thomson Avenue, Cambridge CB3 0FA, UK.
Paul H DearBase4 Innovation Ltd, Broers Building, 21 JJ Thomson Avenue, Cambridge CB3 0FA, UK.
Fabian TolleBase4 Innovation Ltd, Broers Building, 21 JJ Thomson Avenue, Cambridge CB3 0FA, UK.
Edoardo PetriniBase4 Innovation Ltd, Broers Building, 21 JJ Thomson Avenue, Cambridge CB3 0FA, UK.
Michele AmasioBase4 Innovation Ltd, Broers Building, 21 JJ Thomson Avenue, Cambridge CB3 0FA, UK.
Leigh R ShelfordBase4 Innovation Ltd, Broers Building, 21 JJ Thomson Avenue, Cambridge CB3 0FA, UK.
Monica S SaavedraBase4 Innovation Ltd, Broers Building, 21 JJ Thomson Avenue, Cambridge CB3 0FA, UK.
Eoin SheridanBase4 Innovation Ltd, Broers Building, 21 JJ Thomson Avenue, Cambridge CB3 0FA, UK.
Jekaterina KuleshovaBase4 Innovation Ltd, Broers Building, 21 JJ Thomson Avenue, Cambridge CB3 0FA, UK.
Gareth J PoddBase4 Innovation Ltd, Broers Building, 21 JJ Thomson Avenue, Cambridge CB3 0FA, UK.
Barnaby W BalmforthBase4 Innovation Ltd, Broers Building, 21 JJ Thomson Avenue, Cambridge CB3 0FA, UK.
Cameron A FraylingBase4 Innovation Ltd, Broers Building, 21 JJ Thomson Avenue, Cambridge CB3 0FA, UK.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A new approach to single-molecule DNA sequencing in which dNTPs, released by pyrophosphorolysis from the strand to be sequenced, are captured in microdroplets and read directly could have substantial advantages over current sequence-by-synthesis methods; however, there is no existing method sensitive enough to detect a single nucleotide in a microdroplet. We have developed a method for dNTP detection based on an enzymatic two-stage reaction which produces a robust fluorescent signal that is easy to detect and process. By taking advantage of the inherent specificity of DNA polymerases and ligases, coupled with volume restriction in microdroplets, this method allows us to simultaneously detect the presence of and distinguish between, the four natural dNTPs at the single-molecule level, with negligible cross-talk.

Indexed as

DeoxyribonucleosidesDeoxyribonucleotidesDNA-Directed DNA PolymeraseHigh-Throughput Nucleotide SequencingLimit of DetectionMicroscopy, FluorescenceOligodeoxyribonucleotidesSensitivity and SpecificitySequence Analysis, DNADeoxyribonucleosidesDeoxyribonucleotidesDNA-Directed DNA PolymeraseOligodeoxyribonucleotides

Identifiers

PMID31318971
PMCPMC6753480

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.