Evidence map›Paper›PMID 31316816›Full record

ArticleIUCrJ2019

Structures of three ependymin-related proteins suggest their function as a hydrophobic molecule binder.

Jeong Kuk Park, Keon Young Kim, Yeo Won Sim, Yong-In Kim, Jin Kyun Kim, Cheol Lee, Jeongran Han, Chae Un Kim, J Eugene Lee, SangYoun Park

Open access · greenAbstract read
In one paragraph

Article in IUCrJ, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
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  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Jeong Kuk ParkSchool of Systems Biomedical Science, Soongsil University, Seoul 06978, Republic of Korea.
Keon Young KimSchool of Systems Biomedical Science, Soongsil University, Seoul 06978, Republic of Korea.ORCID https://orcid.org/0000-0001-9703-9195
Yeo Won SimSchool of Systems Biomedical Science, Soongsil University, Seoul 06978, Republic of Korea.
Yong-In KimCenter for Bioanalysis, Korea Research Institute of Standards and Science, Daejeon 34113, Republic of Korea.
Jin Kyun KimDepartment of Physics, Ulsan National Institute of Science and Technology, Ulsan 44919, Republic of Korea.
Cheol LeeDepartment of Physics, Ulsan National Institute of Science and Technology, Ulsan 44919, Republic of Korea.
Jeongran HanDepartment of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon 34141, Republic of Korea.
Chae Un KimDepartment of Physics, Ulsan National Institute of Science and Technology, Ulsan 44919, Republic of Korea.
J Eugene LeeCenter for Bioanalysis, Korea Research Institute of Standards and Science, Daejeon 34113, Republic of Korea.ORCID https://orcid.org/0000-0001-8625-6418
SangYoun ParkSchool of Systems Biomedical Science, Soongsil University, Seoul 06978, Republic of Korea.ORCID https://orcid.org/0000-0001-9110-7249
Soongsil University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ependymin was first discovered as a predominant protein in brain extracellular fluid in fish and was suggested to be involved in functions mostly related to learning and memory. Orthologous proteins to ependymin called ependymin-related proteins (EPDRs) have been found to exist in various tissues from sea urchins to humans, yet their functional role remains to be revealed. In this study, the structures of EPDR1 from frog, mouse and human were determined and analyzed. All of the EPDR1s fold into a dimer using a monomeric subunit that is mostly made up of two stacking antiparallel β-sheets with a curvature on one side, resulting in the formation of a deep hydrophobic pocket. All six of the cysteine residues in the monomeric subunit participate in the formation of three intramolecular disulfide bonds. Other interesting features of EPDR1 include two asparagine residues with glycosylation and a Ca

Indexed as

ependyminmammalian ependymin-related proteinprotein structurestructure determinationUCC1X-ray crystallographyX-ray structure

Identifiers

PMID31316816
PMCPMC6608618
OpenAlexW2951167723

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.