Evidence map›Paper›PMID 31316580›Full record

ArticlePlant methods2019

Expanding the bioluminescent reporter toolkit for plant science with NanoLUC.

Uriel Urquiza-García, Andrew J Millar

Abstract read
In one paragraph

Article in Plant methods, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. A NanoLuc-Based Transactivation Assay in Plants.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Uriel Urquiza-García1SynthSys and School of Biological Sciences, University of Edinburgh, C. H. Waddington Building, King's Buildings, Max Born Crescent, Edinburgh, EH9 3BF Scotland, UK.ORCID 0000-0002-7975-5013
Andrew J Millar1SynthSys and School of Biological Sciences, University of Edinburgh, C. H. Waddington Building, King's Buildings, Max Born Crescent, Edinburgh, EH9 3BF Scotland, UK.ORCID 0000-0003-1756-3654

Funding

Biotechnology and Biological Sciences Research Council BB/J009423/1
6 · The paper itself

Abstract

backgroundProtein data over circadian time scale is scarce for clock transcription factors. Further work in this direction is required for refining quantitative clock models. However, gathering highly resolved dynamics of low-abundance transcription factors has been a major challenge in the field. In this work we provide a new tool that could help this major issue. Bioluminescence is an important tool for gathering data on circadian gene expression. It allows data collection over extended time periods for low signal levels, thanks to a large signal-to-noise ratio. However, the main reporter so far used, firefly luciferase (FLUC), presents some disadvantages for reporting total protein levels. For example, the rapid, post-translational inactivation of this luciferase will result in underestimation of protein numbers. A more stable reporter protein could in principle tackle this issue. We noticed that NanoLUC might fill this gap, given its reported brightness and the stability of both enzyme and substrate. However, no data in plant systems on the circadian time scale had been reported.

resultsWe tested NanoLUC activity under different scenarios that will be important for generating highly quantitative data. These include enzyme purification for calibration curves, expression in transient plant systems, stable transgenic plants and

conclusionsWe concluded that NanoLUC reporters are compatible with established instrumentation and protocols for firefly luciferase. Overall, our results provide guidelines for researchers gathering dynamic protein data over different time scales and experimental setups.

Indexed as

ArabidopsisBioluminescenceChronobiologyGene expressionLuciferaseProtein dynamicsReporter geneSynthetic biology

Identifiers

PMID31316580
PMCPMC6613265

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.