Evidence map›Paper›PMID 31316072›Full record

ArticleScientific data2019

The genome assembly of asparagus bean, Vigna unguiculata ssp. sesquipedialis.

Qiuju Xia, Lei Pan, Ru Zhang, Xuemei Ni, Yangzi Wang, Xiao Dong, Yun Gao, Zhe Zhang, Ling Kui, Yong Li and 6 more

Abstract readDataset
In one paragraph

Article in Scientific data, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Review
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  10. Review
  11. Review
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  14. Genome and pan-genome assembly of asparagus bean (Frontiers in plant science · 2022
    Article
  15. Genotyping-by-Sequencing inPlants (Basel, Switzerland) · 2021
    Article
  16. Review
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Qiuju XiaBGI Education Center, University of Chinese Academy of Sciences, Shenzhen, 518083, China.
Lei PanHubei Province Engineering Research Center of Legume Plants, College of Life Sciences, Jianghan University, Wuhan, 430056, China.
Ru ZhangCenter for Ecological and Environmental Sciences, Key Laboratory for Space Bioscience & Biotechnology, Northwestern Polytechnical University, Xi'an, 710072, China.
Xuemei NiBGI Institute of Applied Agriculture, BGI-Shenzhen, Shenzhen, 518120, China.
Yangzi WangBGI Institute of Applied Agriculture, BGI-Shenzhen, Shenzhen, 518120, China.
Xiao DongBGI Institute of Applied Agriculture, BGI-Shenzhen, Shenzhen, 518120, China.
Yun GaoCollege of Biological Big Data, Yunnan Agricultural University, Kunming, 650201, China.
Zhe ZhangBGI Institute of Applied Agriculture, BGI-Shenzhen, Shenzhen, 518120, China.
Ling KuiState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, 650223, China.
Yong LiBGI Institute of Applied Agriculture, BGI-Shenzhen, Shenzhen, 518120, China.
Wen WangCenter for Ecological and Environmental Sciences, Key Laboratory for Space Bioscience & Biotechnology, Northwestern Polytechnical University, Xi'an, 710072, China.
Huanming YangBGI Education Center, University of Chinese Academy of Sciences, Shenzhen, 518083, China.
Chanyou ChenHubei Province Engineering Research Center of Legume Plants, College of Life Sciences, Jianghan University, Wuhan, 430056, China.
Jianhua MiaoGuangxi Key Laboratory of Medicinal Resources Production and Genetic Improvement, Guangxi Botanical Garden of Medicinal Plants, Nanning, 530023, Guangxi, China. mjh1962@163.com.
Wei ChenCollege of Biological Big Data, Yunnan Agricultural University, Kunming, 650201, China. wchenntr@gmail.com.
Yang DongCollege of Biological Big Data, Yunnan Agricultural University, Kunming, 650201, China. loyalyang@163.com.ORCID http://orcid.org/0000-0001-6212-3055

Funding

National Natural Science Foundation of China (National Science Foundation of China) NO.31501369
6 · The paper itself

Abstract

Asparagus bean (Vigna. unguiculata ssp. sesquipedialis), known for its very long and tender green pods, is an important vegetable crop broadly grown in the developing Asian countries. In this study, we reported a 632.8 Mb assembly (549.81 Mb non-N size) of asparagus bean based on the whole genome shotgun sequencing strategy. We also generated a linkage map for asparagus bean, which helped anchor 94.42% of the scaffolds into 11 pseudo-chromosomes. A total of 42,609 protein-coding genes and 3,579 non-protein-coding genes were predicted from the assembly. Taken together, these genomic resources of asparagus bean will help develop a pan-genome of V. unguiculata and facilitate the investigation of economically valuable traits in this species, so that the cultivation of this plant would help combat the protein and energy malnutrition in the developing world.

Indexed as

Genome, PlantChromosome MappingDNA Transposable ElementsGenetic LinkageGenomicsMolecular Sequence AnnotationVignaWhole Genome SequencingDNA Transposable Elements

Identifiers

PMID31316072
PMCPMC6638192

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.