Evidence map›Paper›PMID 31315229›Full record

ArticleInternational journal of molecular sciences2019

Near-Infrared Genetically Encoded Positive Calcium Indicator Based on GAF-FP Bacterial Phytochrome.

Oksana M Subach, Natalia V Barykina, Konstantin V Anokhin, Kiryl D Piatkevich, Fedor V Subach

Abstract read
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Article in International journal of molecular sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Article
  2. Review
  3. Two-Photon Microscopy to Measure Calcium Signaling in the Living Brain.Methods in molecular biology (Clifton, N.J.) · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Oksana M SubachNational Research Center "Kurchatov Institute", Moscow 123182, Russia.ORCID 0000-0002-6197-0479
Natalia V BarykinaP.K. Anokhin Institute of Normal Physiology, Moscow 125315, Russia.ORCID 0000-0001-5835-8388
Konstantin V AnokhinP.K. Anokhin Institute of Normal Physiology, Moscow 125315, Russia.
Kiryl D PiatkevichMIT Media Lab, Massachusetts Institute of Technology, Cambridge, MA 02139-4307, USA.ORCID 0000-0002-7777-9468
Fedor V SubachNational Research Center "Kurchatov Institute", Moscow 123182, Russia. subach_fv@nrcki.ru.ORCID 0000-0003-2720-7821

Funding

Russian Foundation for Basic Research 19-04-00395Russian Science Foundation 14-15-00685Russian Science Foundation 16-15-10323
6 · The paper itself

Abstract

A variety of genetically encoded calcium indicators are currently available for visualization of calcium dynamics in cultured cells and in vivo. Only one of them, called NIR-GECO1, exhibits fluorescence in the near-infrared region of the spectrum. NIR-GECO1 is engineered based on the near-infrared fluorescent protein mIFP derived from bacterial phytochromes. However, NIR-GECO1 has an inverted response to calcium ions and its excitation spectrum is not optimal for the commonly used 640 nm lasers. Using small near-infrared bacterial phytochrome GAF-FP and calmodulin/M13-peptide pair, we developed a near-infrared calcium indicator called GAF-CaMP2. In vitro, GAF-CaMP2 showed a positive response of 78% and high affinity (K

Indexed as

CalciumCalcium SignalingCalmodulinHeLa CellsHumansInfrared RaysOptical ImagingPhytochromeProtein EngineeringRecombinant ProteinsCalciumCalmodulinPhytochromeRecombinant Proteinscalcium imaginggenetically encoded calcium indicatornear-infrared fluorescent bacterial phytochromeprotein engineering

Identifiers

PMID31315229
PMCPMC6678319

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.