ArticlePlant biotechnology journal2020
The draft genome of a wild barley genotype reveals its enrichment in genes related to biotic and abiotic stresses compared to cultivated barley.
Article in Plant biotechnology journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.
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38 citing papers in PubMed.
- Genomic and evolutionary analysis reveals dynamic variations of MKK3 gene, a key regulator for seed dormancy in barley.The plant genome · 2026Article
- Identification of novel QTL for tiller angle on chromosome 2H and 5H in barley.BMC plant biology · 2026Article
- Identification and association mapping of sources of stem rust resistance in the wild barley diversity panel effective against virulent isolates from the Pacific Northwest.G3 (Bethesda, Md.) · 2026Article
- Discovery and Evolutionary Analysis of a Novel Genus of Endogenous Pararetroviruses with Long Terminal Repeats.Genome biology and evolution · 2025Article
- Genetic structure and marker-trait association analysis for agro-morphological and physiological characteristics in germplasm of wild barley (Hordeum vulgare subsp. spontaneum).Scientific reports · 2025Article
- Marker-trait association analysis for root and shoot traits at the seedling stage of wild barley (AoB PLANTS · 2025Article
- Genome-wide identification and characterization of stress-responsive genes in Chlorella vulgaris.BMC genomic data · 2025Article
- Hordeum I genome unlocks adaptive evolution and genetic potential for crop improvement.Nature plants · 2025Article
- Unveiling the genetic architecture of barley embryo: QTL mapping, candidate genes identification and its relationship with kernel size and early vigour.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Genome-wide identification and characterization analysis ofFrontiers in plant science · 2025Article
- Comparative Transcriptomic Analysis Reveals Domestication and Improvement Patterns of Broomcorn Millet (International journal of molecular sciences · 2024Article
- Fungal Disease Tolerance with a Focus on Wheat: A Review.Journal of fungi (Basel, Switzerland) · 2024Review
- The Evolution, Expression Patterns, and Domestication Selection Analysis of the Annexin Gene Family in the Barley Pan-Genome.International journal of molecular sciences · 2024Article
- Article
- Identification of a novel and plant height-independent QTL for coleoptile length in barley and validation of its effect using near isogenic lines.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Genome-wide identification, characterization, and evolutionary analysis of the barley TALE gene family and its expression profiles in response to exogenous hormones.Frontiers in plant science · 2024Article
- Exploring WildPlants (Basel, Switzerland) · 2023Article
- High-quality wild barley genome assemblies and annotation with Nanopore long reads and Hi-C sequencing data.Scientific data · 2023Article
- Salt Stress-Related Mechanisms in Leaves of the Wild BarleyLife (Basel, Switzerland) · 2023Article
- Insights into the Transcriptomics of Crop Wild Relatives to Unravel the Salinity Stress Adaptive Mechanisms.International journal of molecular sciences · 2023Review
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10 authors.
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Abstract
Wild barley (Hordeum spontaneum) is the progenitor of cultivated barley (Hordeum vulgare) and provides a rich source of genetic variations for barley improvement. Currently, the genome sequences of wild barley and its differences with cultivated barley remain unclear. In this study, we report a high-quality draft assembly of wild barley accession (AWCS276; henceforth named as WB1), which consists of 4.28 Gb genome and 36 395 high-confidence protein-coding genes. BUSCO analysis revealed that the assembly included full lengths of 95.3% of the 956 single-copy plant genes, illustrating that the gene-containing regions have been well assembled. By comparing with the genome of the cultivated genotype Morex, it is inferred that the WB1 genome contains more genes involved in resistance and tolerance to biotic and abiotic stresses. The presence of the numerous WB1-specific genes indicates that, in addition to enhance allele diversity for genes already existing in the cultigen, exploiting the wild barley taxon in breeding should also allow the incorporation of novel genes. Furthermore, high levels of genetic variation in the pericentromeric regions were detected in chromosomes 3H and 5H between the wild and cultivated genotypes, which may be the results of domestication. This H. spontaneum draft genome assembly will help to accelerate wild barley research and be an invaluable resource for barley improvement and comparative genomics research.
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