Evidence map›Paper›PMID 31313851›Full record

ArticleThe EMBO journal2019

The Ulp2 SUMO protease promotes transcription elongation through regulation of histone sumoylation.

Hong-Yeoul Ryu, Dan Su, Nicole R Wilson-Eisele, Dejian Zhao, Francesc López-Giráldez, Mark Hochstrasser

Open access · greenAbstract read
In one paragraph

Article in The EMBO journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 39 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. The SUMO Pathway.Methods in molecular biology (Clifton, N.J.) · 2025
    Review
  6. Article
  7. Article
  8. Article
  9. Histone H2B ubiquitylation: Connections to transcription and effects on chromatin structure.Biochimica et biophysica acta. Gene regulatory mechanisms · 2024
    Review
  10. Article
  11. Article
  12. Function and regulation of ubiquitin-like SUMO system in heart.Frontiers in cell and developmental biology · 2023
    Review
  13. Histone modification inComputational and structural biotechnology journal · 2023
    Review
  14. Review
  15. SUMOylation targeting mitophagy in cardiovascular diseases.Journal of molecular medicine (Berlin, Germany) · 2022
    Review
  16. SUMOylation and Major Depressive Disorder.International journal of molecular sciences · 2022
    Review
  17. Article
  18. Nuclear mRNA Export and Aging.International journal of molecular sciences · 2022
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Hong-Yeoul RyuDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA.ORCID 0000-0002-3367-9887
Dan SuDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA.
Nicole R Wilson-EiseleDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA.
Dejian ZhaoYale Center for Genome Analysis, Yale University, New Haven, CT, USA.
Francesc López-GiráldezYale Center for Genome Analysis, Yale University, New Haven, CT, USA.
Mark HochstrasserDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA.ORCID 0000-0002-1131-5484
Yale University · US

Funding

FUNCTIONS AND MECHANISMS OF DEUBIQUITINATING ENZYMESR01GM053756 · NIGMS · YALE UNIVERSITY · PI HOCHSTRASSER, MARK W · 1996 to 2019
$6.5M
High Performance Computing Instrumentation for the Yale Center for Genome AnalysiS10OD018521 · OD · YALE UNIVERSITY · PI MANE, SHRIKANT M · 2015 to 2015
$890k
HHS|National Institutes of Health (NIH) GM053756NIGMS NIH HHS R01 GM053756NIH HHS S10 OD018521
6 · The paper itself

Abstract

Many eukaryotic proteins are regulated by modification with the ubiquitin-like protein small ubiquitin-like modifier (SUMO). This linkage is reversed by SUMO proteases, of which there are two in Saccharomyces cerevisiae, Ulp1 and Ulp2. SUMO-protein conjugation regulates transcription, but the roles of SUMO proteases in transcription remain unclear. We report that Ulp2 is recruited to transcriptionally active genes to control local polysumoylation. Mutant ulp2 cells show impaired association of RNA polymerase II (RNAPII) with, and diminished expression of, constitutively active genes and the inducible CUP1 gene. Ulp2 loss sensitizes cells to 6-azauracil, a hallmark of transcriptional elongation defects. We also describe a novel chromatin regulatory mechanism whereby histone-H2B ubiquitylation stimulates histone sumoylation, which in turn appears to inhibit nucleosome association of the Ctk1 kinase. Ctk1 phosphorylates serine-2 (S2) in the RNAPII C-terminal domain (CTD) and promotes transcript elongation. Removal of both ubiquitin and SUMO from histones is needed to overcome the impediment to S2 phosphorylation. These results suggest sequential ubiquitin-histone and SUMO-histone modifications recruit Ulp2, which removes polySUMO chains and promotes RNAPII transcription elongation.

Indexed as

MutationTranscription Elongation, GeneticEndopeptidasesGene Expression Regulation, FungalHistonesMetallothioneinRNA Polymerase IISaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSumoylationTranscriptional ActivationUracilazauracilCUP1-1 protein, S cerevisiaeEndopeptidasesHistonesMetallothioneinRNA Polymerase IISaccharomyces cerevisiae ProteinsULP2 protein, S cerevisiaeUracilCTD phosphorylationhistoneSUMOubiquitinUlp2

Identifiers

PMID31313851
PMCPMC6694223
OpenAlexW2961826734

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.