Evidence map›Paper›PMID 31313802›Full record

ArticleHuman molecular genetics2019

A gene regulatory network explains RET-EDNRB epistasis in Hirschsprung disease.

Sumantra Chatterjee, Aravinda Chakravarti

Open access · greenAbstract read
In one paragraph

Article in Human molecular genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. bioRxiv : the preprint server for biology · 2026
    Article
  4. Aberrant Expressions ofCurrent pediatric reviews · 2026
    Article
  5. Joint disruption ofProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Article
  7. Article
  8. The Role ofmedRxiv : the preprint server for health sciences · 2025
    Article
  9. Article
  10. Article
  11. Endothelin signaling in development.Development (Cambridge, England) · 2023
    Review
  12. Article
  13. Hirschsprung disease.Nature reviews. Disease primers · 2023
    Review
  14. Article
  15. Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  16. Article
  17. Article
  18. Association betweenTranslational pediatrics · 2022
    Article
  19. Article
  20. Susceptibility ofFrontiers in pediatrics · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Sumantra ChatterjeeCenter for Human Genetics and Genomics, New York University School of Medicine, New York, NY, USA.
Aravinda ChakravartiCenter for Human Genetics and Genomics, New York University School of Medicine, New York, NY, USA.
Center for Human Genetics · US

Funding

Genetic Analysis of Hirschsprung Disease - RenewalR01HD028088 · NICHD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CHAKRAVARTI, ARAVINDA · 1991 to 2024
$6.2M
Genetic Analysis of Hirschsprung DiseaseR37HD028088 · NICHD · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI CHAKRAVARTI, ARAVINDA · 2010 to 2019
$6.2M
NICHD NIH HHS R01 HD028088NICHD NIH HHS R37 HD028088
6 · The paper itself

Abstract

Disruptions in gene regulatory networks (GRNs), driven by multiple deleterious variants, potentially underlie complex traits and diseases. Hirschsprung disease (HSCR), a multifactorial disorder of enteric nervous system (ENS) development, is associated with at least 24 genes and seven chromosomal loci, with RET and EDNRB as its major genes. We previously demonstrated that RET transcription in the ENS is controlled by an extensive GRN involving the transcription factors (TFs) RARB, GATA2 and SOX10 and other HSCR genes. We now demonstrate, using human and mouse cellular and animal models, that EDNRB is transcriptionally regulated in the ENS by GATA2, SOX10 and NKX2.5 TFs. Significantly, RET and EDNRB expression is regulated by their shared use of GATA2 and SOX10, and in turn, these TFs are controlled by EDNRB and RET in a dose-dependent manner. This study expands the ENS development GRN to include both RET and EDNRB, uncovers the mechanistic basis for RET-EDNRB epistasis and emphasizes how functionally different genes associated with a complex disorder can be united through a common GRN.

Indexed as

Epistasis, GeneticGene Expression RegulationGene Regulatory NetworksAnimalsDisease Models, AnimalEnhancer Elements, GeneticEpigenesis, GeneticGenetic Association StudiesGenetic Predisposition to DiseaseHirschsprung DiseaseHumansMiceModels, BiologicalProto-Oncogene Proteins c-retReceptor, Endothelin BRegulatory Sequences, Nucleic AcidEDNRB protein, humanProto-Oncogene Proteins c-retReceptor, Endothelin BTranscription Factors

Identifiers

PMID31313802
PMCPMC7275776
OpenAlexW2962329643

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.