Evidence map›Paper›PMID 31313617›Full record

ArticleAmerican journal of physiology. Lung cellular and molecular physiology2019

Analysis of biological networks in the endothelium with biomimetic microsystem platform.

Kevin Kruse, Jeff Klomp, Mitchell Sun, Zhang Chen, Dianicha Santana, Fei Huang, Pinal Kanabar, Mark Maienschein-Cline, Yulia A Komarova

Open access · bronzeAbstract read
In one paragraph

Article in American journal of physiology. Lung cellular and molecular physiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.1field-weighted citation impact, top 54% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Kevin KruseDepartment of Pharmacology, University of Illinois at Chicago, Chicago, Illinois.
Jeff KlompDepartment of Pharmacology, University of Illinois at Chicago, Chicago, Illinois.
Mitchell SunDepartment of Pharmacology, University of Illinois at Chicago, Chicago, Illinois.
Zhang ChenDepartment of Pharmacology, University of Illinois at Chicago, Chicago, Illinois.
Dianicha SantanaDepartment of Pharmacology, University of Illinois at Chicago, Chicago, Illinois.
Fei HuangDepartment of Pharmacology, University of Illinois at Chicago, Chicago, Illinois.
Pinal KanabarResearch Informatics Core of the Research Resources Center, University of Illinois at Chicago, Chicago, Illinois.
Mark Maienschein-ClineResearch Informatics Core of the Research Resources Center, University of Illinois at Chicago, Chicago, Illinois.
Yulia A KomarovaDepartment of Pharmacology, University of Illinois at Chicago, Chicago, Illinois.
University of Illinois Chicago · US

Funding

Strengthening Stakeholder Engagement in Human Research Protections.UL1TR002003 · NCATS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI KARNIK, NIRANJAN SUBHASH, MERMELSTEIN, ROBIN J. · 2016 to 2024
$33.7M
TRAINING PROGRAM IN LUNG BIOLOGY AND PATHOBIOLOGYT32HL007829 · NHLBI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI DOLLY MEHTA · 1995 to 2026
$15.6M
Role of End Binding 3 in Mechanism of vascular permeabilityR01HL103922 · NHLBI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI KOMAROVA, YULIA A · 2011 to 2014
$1.5M
NCATS NIH HHS UL1 TR002003NHLBI NIH HHS R01 HL103922NHLBI NIH HHS T32 HL007829
6 · The paper itself

Abstract

Here we describe a novel method for studying the protein "interactome" in primary human cells and apply this method to investigate the effect of posttranslational protein modifications (PTMs) on the protein's functions. We created a novel "biomimetic microsystem platform" (Bio-MSP) to isolate the protein complexes in primary cells by covalently attaching purified His-tagged proteins to a solid microscale support. Using this Bio-MSP, we have analyzed the interactomes of unphosphorylated and phosphomimetic end-binding protein-3 (EB3) in endothelial cells. Pathway analysis of these interactomes demonstrated the novel role of EB3 phosphorylation at serine 162 in regulating the protein's function. We showed that phosphorylation "switches" the EB3 biological network to modulate cellular processes such as cell-to-cell adhesion whereas dephosphorylation of this site promotes cell proliferation. This novel technique provides a useful tool to study the role of PTMs or single point mutations in activating distinct signal transduction networks and thereby the biological function of the protein in health and disease.

Indexed as

BiomimeticsComputational BiologyEndothelial CellsEndotheliumHumansPhosphorylationProtein Processing, Post-TranslationalProteinsProteomicsSignal TransductionProteinsendothelial biologyinteractomemass spectrometrypathway analysissignaling networks

Identifiers

PMID31313617
PMCPMC6766717
OpenAlexW2961395010

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.