Evidence map›Paper›PMID 31312934›Full record

ArticleCurrent genetics2020

The AP-1-like transcription factor ChAP1 balances tolerance and cell death in the response of the maize pathogen Cochliobolus heterostrophus to a plant phenolic.

Hiba Simaan, Samer Shalaby, Maor Hatoel, Olga Karinski, Orit Goldshmidt-Tran, Benjamin A Horwitz

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Article in Current genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Hiba SimaanFaculty of Biology, Technion-Israel Institute of Technology, 32000, Haifa, Israel.
Samer ShalabyFaculty of Biology, Technion-Israel Institute of Technology, 32000, Haifa, Israel.
Maor HatoelTechnion Genome Center, Technion-Israel Institute of Technology, 32000, Haifa, Israel.
Olga KarinskiTechnion Genome Center, Technion-Israel Institute of Technology, 32000, Haifa, Israel.
Orit Goldshmidt-TranFaculty of Biology, Technion-Israel Institute of Technology, 32000, Haifa, Israel.
Benjamin A HorwitzFaculty of Biology, Technion-Israel Institute of Technology, 32000, Haifa, Israel. horwitz@technion.ac.il.
Technion – Israel Institute of Technology · ILRockefeller University · US

Funding

Israel Science Foundation 332/13
6 · The paper itself

Abstract

Fungal pathogens need to contend with stresses including oxidants and antimicrobial chemicals resulting from host defenses. ChAP1 of Cochliobolus heterostrophus, agent of Southern corn leaf blight, encodes an ortholog of yeast YAP1. ChAP1 is retained in the nucleus in response to plant-derived phenolic acids, in addition to its well-studied activation by oxidants. Here, we used transcriptome profiling to ask which genes are regulated in response to ChAP1 activation by ferulic acid (FA), a phenolic abundant in the maize host. Nuclearization of ChAP1 in response to phenolics is not followed by strong expression of genes needed for oxidative stress tolerance. We, therefore, compared the transcriptomes of the wild-type pathogen and a ChAP1 deletion mutant, to study the function of ChAP1 in response to FA. We hypothesized that if ChAP1 is retained in the nucleus under plant-related stress conditions yet in the absence of obvious oxidant stress, it should have additional regulatory functions. The transcriptional signature in response to FA in the wild type compared to the mutant sheds light on the signaling mechanisms and response pathways by which ChAP1 can mediate tolerance to ferulic acid, distinct from its previously known role in the antioxidant response. The ChAP1-dependent FA regulon consists mainly of two large clusters. The enrichment of transport and metabolism-related genes in cluster 1 indicates that C. heterostrophus degrades FA and removes it from the cell. When this fails at increasing stress levels, FA provides a signal for cell death, indicated by the enrichment of cell death-related genes in cluster 2. By quantitation of survival and by TUNEL assays, we show that ChAP1 promotes survival and mitigates cell death. Growth rate data show a time window in which the mutant colony expands faster than the wild type. The results delineate a transcriptional regulatory pattern in which ChAP1 helps balance a survival response for tolerance to FA, against a pathway promoting cell death in the pathogen. A general model for the transition from a phase where the return to homeostasis dominates to a phase leading to the onset of cell death provides a context for understanding these findings.

Indexed as

Host-Pathogen InteractionsAscomycotaBiomarkersComputational BiologyFungal ProteinsGene Expression ProfilingGene Expression RegulationGene OntologyPhenolsPlant DiseasesTranscription Factor AP-1Zea maysBiomarkersFungal ProteinsPhenolsTranscription Factor AP-1Cell deathCochliobolus heterostrophusDetoxificationFerulic acidPathogenPhenolicPlantStressToleranceTranscription factor

Identifiers

PMID31312934
OpenAlexW2958203484

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.