Evidence map›Paper›PMID 31311986›Full record

ArticleJournal of human genetics2019

Entire FGF12 duplication by complex chromosomal rearrangements associated with West syndrome.

Yoichiro Oda, Yuri Uchiyama, Ai Motomura, Atsushi Fujita, Yoshiteru Azuma, Yutaka Harita, Takeshi Mizuguchi, Kumiko Yanagi, Hiroko Ogata, Kenichiro Hata and 4 more

Abstract readCase Reports
PubMed Publisher
In one paragraph

Article in Journal of human genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
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  7. Biallelic structural variations withinLife science alliance · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Yoichiro OdaDepartment of Pediatrics, Chigasaki Municipal Hospital, Chigasaki, Japan.
Yuri UchiyamaDepartment of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama, Japan.ORCID https://orcid.org/0000-0002-4540-5277
Ai MotomuraDepartment of Pediatrics, Chigasaki Municipal Hospital, Chigasaki, Japan.
Atsushi FujitaDepartment of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama, Japan.
Yoshiteru AzumaDepartment of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama, Japan.
Yutaka HaritaDepartment of Pediatrics, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.
Takeshi MizuguchiDepartment of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama, Japan.
Kumiko YanagiDepartment of Genome Medicine, National Center for Child Health and Development, Tokyo, Japan.
Hiroko OgataDepartment of Maternal-Fetal Biology, National Research Institute for Child Health and Development, Tokyo, Japan.
Kenichiro HataDepartment of Maternal-Fetal Biology, National Research Institute for Child Health and Development, Tokyo, Japan.
Tadashi KanameDepartment of Genome Medicine, National Center for Child Health and Development, Tokyo, Japan.ORCID http://orcid.org/0000-0003-0281-9610
Yoichi MatsubaraNational Research Institute for Child Health and Development, Tokyo, Japan.
Keiko WakuiDepartment of Medical Genetics, Shinshu University School of Medicine, Matsumoto, Japan.
Naomichi MatsumotoDepartment of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama, Japan. naomat@yokohama-cu.ac.jp.ORCID https://orcid.org/0000-0001-9846-6500
National Center For Child Health and Development · JPYokohama City University · JPShinshu University · JPThe University of Tokyo · JP

Funding

Japan Agency for Medical Research and Development (AMED) JP18dm0107090Japan Agency for Medical Research and Development (AMED) JP18ek0109301Japan Agency for Medical Research and Development (AMED) JP18ek0109348Japan Agency for Medical Research and Development (AMED) JP18kk020501MEXT | Japan Society for the Promotion of Science (JSPS) JP16H05160MEXT | Japan Society for the Promotion of Science (JSPS) JP16H05357MEXT | Japan Society for the Promotion of Science (JSPS) JP16H06254MEXT | Japan Society for the Promotion of Science (JSPS) JP17H01539MEXT | Japan Society for the Promotion of Science (JSPS) JP17K10080
6 · The paper itself

Abstract

Complex rearrangements of chromosomes 3 and 9 were found in a patient presenting with severe epilepsy, developmental delay, dysmorphic facial features, and skeletal abnormalities. Molecular cytogenetic analysis revealed 46,XX.ish der(9)(3qter→3q28::9p21.1→9p22.3::9p22.3→9qter)(RP11-368G14+,RP11-299O8-,RP11-905L2++,RP11-775E6++). Her dysmorphic features are consistent with 3q29 microduplication syndrome and inv dup del(9p). Trio-based WES of the patient revealed no pathogenic single nucleotide variants causing epilepsy, but confirmed a 3q28q29 duplication involving FGF12, which encodes fibroblast growth factor 12. FGF12 positively regulates the activity of voltage-gated sodium channels. Recently, only one recurrent gain-of-function variant [NM_021032.4:c.341G>A:p.(Arg114His)] in FGF12 was found in a total of 10 patients with severe early-onset epilepsy. We propose that the patient's entire FGF12 duplication may be analogous to the gain-of-function variant in FGF12 in the epileptic phenotype of this patient.

Indexed as

AdolescentChromosome DeletionChromosome DisordersChromosome DuplicationChromosomes, Human, Pair 3Chromosomes, Human, Pair 9DNA Copy Number VariationsExome SequencingFemaleFibroblast Growth FactorsGene DuplicationHumansInfantNeurodevelopmental DisordersPedigreeSpasms, InfantileFGF12 protein, humanFibroblast Growth Factors

Identifiers

PMID31311986
OpenAlexW2956444541

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.