Evidence map›Paper›PMID 31311985›Full record

ArticleScientific reports2019

In Silico Identification of Novel Biomarkers and Development of New Rapid Diagnostic Tests for the Filarial Parasites Mansonella perstans and Mansonella ozzardi.

C B Poole, A Sinha, L Ettwiller, L Apone, K McKay, V Panchapakesa, N F Lima, M U Ferreira, S Wanji, C K S Carlow

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Pathogens (Basel, Switzerland) · 2024
    Article
  3. Redescription, molecular characterisation andCurrent research in parasitology & vector-borne diseases · 2024
    Article
  4. Filarial disease in the Brazilian Amazon and emerging opportunities for treatment and control.Current research in parasitology & vector-borne diseases · 2024
    Review
  5. Article
  6. Molecular surveillance detects high prevalence of the neglected parasitemedRxiv : the preprint server for health sciences · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Whole genome analysis of two sympatric humanFrontiers in cellular and infection microbiology · 2023
    Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 4 countries.

C B PooleNew England Biolabs, Massachusetts, USA.
A SinhaNew England Biolabs, Massachusetts, USA.ORCID http://orcid.org/0000-0003-1849-710X
L EttwillerNew England Biolabs, Massachusetts, USA.ORCID http://orcid.org/0000-0002-3957-6539
L AponeNew England Biolabs, Massachusetts, USA.
K McKayNew England Biolabs, Massachusetts, USA.
V PanchapakesaNew England Biolabs, Massachusetts, USA.
N F LimaDepartment of Parasitology, Institute of Biomedical Sciences, University of São Paulo, São Paulo, Brazil.
M U FerreiraDepartment of Parasitology, Institute of Biomedical Sciences, University of São Paulo, São Paulo, Brazil.
S WanjiDepartment of Microbiology and Parasitology, University of Buea, Buea, Cameroon.
C K S CarlowNew England Biolabs, Massachusetts, USA. carlow@neb.com.
New England Biolabs (United States) · USUniversidade de São Paulo · BRUniversity of Buea · CM

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mansonelliasis is a widespread yet neglected tropical infection of humans in Africa and South America caused by the filarial nematodes, Mansonella perstans, M. ozzardi, M. rodhaini and M. streptocerca. Clinical symptoms are non-distinct and diagnosis mainly relies on the detection of microfilariae in skin or blood. Species-specific DNA repeat sequences have been used as highly sensitive biomarkers for filarial nematodes. We have developed a bioinformatic pipeline to mine Illumina reads obtained from sequencing M. perstans and M. ozzardi genomic DNA for new repeat biomarker candidates which were used to develop loop-mediated isothermal amplification (LAMP) diagnostic tests. The M. perstans assay based on the Mp419 repeat has a limit of detection of 0.1 pg, equivalent of 1/1000

Indexed as

Genetic MarkersRepetitive Sequences, Nucleic AcidAfricaAnimalsComputer SimulationDiagnostic Tests, RoutineDNA, ProtozoanFemaleHigh-Throughput Nucleotide SequencingHumansMaleMansonellaMansonelliasisMolecular Diagnostic TechniquesNeglected DiseasesNucleic Acid Amplification TechniquesDNA, ProtozoanGenetic Markers

Identifiers

PMID31311985
PMCPMC6635353
OpenAlexW2958194661

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.