Evidence map›Paper›PMID 31311948›Full record

ArticleScientific reports2019

Global impact of diet and temperature over aquaculture of Octopus vulgaris paralarvae from a transcriptomic approach.

P García-Fernández, M Prado-Alvarez, M Nande, D Garcia de la Serrana, C Perales-Raya, E Almansa, I Varó, C Gestal

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Identifying Natural Bioactive Peptides from the Common Octopus (International journal of molecular sciences · 2023
    Article
  9. Insights into Common Octopus (Marine drugs · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

P García-FernándezMarine Molecular Pathobiology Group, Institute of Marine Research (IIM-CSIC), Vigo, Spain.
M Prado-AlvarezMarine Molecular Pathobiology Group, Institute of Marine Research (IIM-CSIC), Vigo, Spain.ORCID http://orcid.org/0000-0002-6022-5768
M NandeInstituto Español de Oceanografía, Centro Oceanográfico de Vigo, Vigo, Spain.
D Garcia de la SerranaSerra Húnter Fellow, Department of Cell Biology, Physiology and Immunology, University of Barcelona, Barcelona, Spain.
C Perales-RayaInstituto Español de Oceanografía. Centro Oceanográfico de Canarias, Santa Cruz de Tenerife, Spain.
E AlmansaInstituto Español de Oceanografía. Centro Oceanográfico de Canarias, Santa Cruz de Tenerife, Spain.ORCID http://orcid.org/0000-0002-1015-1334
I VaróInstituto de Acuicultura Torre de la Sal (IATS-CSIC), Castellón, Spain.
C GestalMarine Molecular Pathobiology Group, Institute of Marine Research (IIM-CSIC), Vigo, Spain. cgestal@iim.csic.es.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Common octopus, Octopus vulgaris, is an economically important cephalopod species. However, its rearing under captivity is currently challenged by massive mortalities previous to their juvenile stage due to nutritional and environmental factors. Dissecting the genetic basis and regulatory mechanism behind this mortality requires genomic background knowledge. A transcriptomic sequencing of 10 dph octopus paralarvae from different experimental conditions was constructed via RNA-seq. A total of 613,767,530 raw reads were filtered and de novo assembled into 363,527 contigs of which 82,513 were annotated in UniProt carrying also their GO and KEGG information. Differential gene expression analysis was carried out on paralarvae reared under different diet regimes and temperatures, also including wild paralarvae. Genes related to lipid metabolism exhibited higher transcriptional levels in individuals whose diet includes crustacean zoeas, which had an impact over their development and immune response capability. High temperature induces acclimation processes at the time that increase metabolic demands and oxidative stress. Wild individuals show an expression profile unexpectedly similar to Artemia fed individuals. Proteomic results support the hypothesis revealed by transcriptional analysis. The comparative study of the O. vulgaris transcriptomic profiles allowed the identification of genes that deserve to be further studied as candidates for biomarkers of development and health. The results obtained here on the transcriptional variations of genes caused by diet and temperature will provide new perspectives in understanding the molecular mechanisms behind nutritional and temperature requirements of common octopus that will open new opportunities to deepen in paralarvae rearing requirements.

Indexed as

AcclimatizationAnimal FeedAnimalsGene Expression ProfilingGene Expression RegulationHot TemperatureLipid MetabolismOctopodiformesSequence Analysis, RNATemperature

Identifiers

PMID31311948
PMCPMC6635378

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.