Evidence map›Paper›PMID 31311861›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Spindle-shaped viruses infect marine ammonia-oxidizing thaumarchaea.

Jong-Geol Kim, So-Jeong Kim, Virginija Cvirkaite-Krupovic, Woon-Jong Yu, Joo-Han Gwak, Mario López-Pérez, Francisco Rodriguez-Valera, Mart Krupovic, Jang-Cheon Cho, Sung-Keun Rhee

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
5.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 59 citations in OpenAlex.

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  17. Exploring the Archaeal Virosphere by Metagenomics.Methods in molecular biology (Clifton, N.J.) · 2024
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Jong-Geol KimDepartment of Microbiology, Chungbuk National University, Heungduk-gu, 361-763 Cheongju, South Korea.
So-Jeong KimGeologic Environment Research Division, Korea Institute of Geoscience and Mineral Resources, 34132 Daejeon, Republic of Korea.
Virginija Cvirkaite-KrupovicDepartment of Microbiology, Institut Pasteur, 75015 Paris, France.
Woon-Jong YuDepartment of Microbiology, Chungbuk National University, Heungduk-gu, 361-763 Cheongju, South Korea.
Joo-Han GwakDepartment of Microbiology, Chungbuk National University, Heungduk-gu, 361-763 Cheongju, South Korea.
Mario López-PérezEvolutionary Genomics Group, Universidad Miguel Hernandez, San Juan, 03540 Alicante, Spain.
Francisco Rodriguez-ValeraEvolutionary Genomics Group, Universidad Miguel Hernandez, San Juan, 03540 Alicante, Spain.
Mart KrupovicDepartment of Microbiology, Institut Pasteur, 75015 Paris, France.ORCID 0000-0001-5486-0098
Jang-Cheon ChoDepartment of Biological Sciences, Inha University, 22212 Incheon, Republic of Korea.ORCID 0000-0002-0666-3791
Sung-Keun RheeDepartment of Microbiology, Chungbuk National University, Heungduk-gu, 361-763 Cheongju, South Korea; rhees@chungbuk.ac.kr.
Chungbuk National University · KRInstitut Pasteur · FRUniversitat de Miguel Hernández d'Elx · ESInha University · KRKorea Institute of Geoscience and Mineral Resources · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ammonia-oxidizing archaea (AOA) from the phylum Thaumarchaeota are ubiquitous in marine ecosystems and play a prominent role in carbon and nitrogen cycling. Previous studies have suggested that, like all microbes, thaumarchaea are infected by viruses and that viral predation has a profound impact on thaumarchaeal functioning and mortality, thereby regulating global biogeochemical cycles. However, not a single virus capable of infecting thaumarchaea has been reported thus far. Here we describe the isolation and characterization of three

Indexed as

Aquatic OrganismsArchaeaDNA, ArchaealVirus ReplicationAmmoniaBacteriophagesAmmoniaDNA, Archaealammonia-oxidizing archaeachronic infectionspindle-shaped virusviral predation

Identifiers

PMID31311861
PMCPMC6681747
OpenAlexW2957790423

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.