Evidence map›Paper›PMID 31311552›Full record

ArticleMalaria journal2019

Temporal changes in Plasmodium falciparum reticulocyte binding protein homolog 2b (PfRh2b) in Senegal and The Gambia.

Cyrille K Diédhiou, Rahama A Moussa, Amy K Bei, Rachel Daniels, Nasserdine Papa Mze, Daouda Ndiaye, Ngor Faye, Dyann Wirth, Alfred Amambua-Ngwa, Souleymane Mboup and 1 more

Abstract read
In one paragraph

Article in Malaria journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Cells · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Cyrille K DiédhiouInstitute for Health Research, Epidemiological Surveillance and Training (IRESSEF), Dakar, Senegal.
Rahama A MoussaLaboratory of Bacteriology and Virology, Hospital Aristide Le Dantec, 7325, Dakar, Senegal.
Amy K BeiLaboratory of Bacteriology and Virology, Hospital Aristide Le Dantec, 7325, Dakar, Senegal.
Rachel DanielsDepartment of Immunology & Infectious Diseases, Harvard TH Chan School of Public Health, 665 Huntington Avenue, Boston, MA, USA.
Nasserdine Papa MzeInstitute for Health Research, Epidemiological Surveillance and Training (IRESSEF), Dakar, Senegal.
Daouda NdiayeLaboratory of Parasitology Mycology, Aristide Le Dantec Hospital, Faculty of Medicine and Pharmacy, Cheikh Anta Diop University, 5005, Dakar, Senegal.
Ngor FayeFaculty of Sciences and Technologies, University Cheikh Anta Diop, Dakar, PO Box 5005, Dakar, Senegal.
Dyann WirthDepartment of Immunology & Infectious Diseases, Harvard TH Chan School of Public Health, 665 Huntington Avenue, Boston, MA, USA.
Alfred Amambua-NgwaMedical Research Council Unit, The Gambia at LSHTM, Fajara, Banjul, The Gambia.
Souleymane MboupInstitute for Health Research, Epidemiological Surveillance and Training (IRESSEF), Dakar, Senegal.
Ambroise D AhouidiInstitute for Health Research, Epidemiological Surveillance and Training (IRESSEF), Dakar, Senegal. ambroise.ahouidi@iressef.org.ORCID http://orcid.org/0000-0002-7009-8408

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
FP7 Ideas: European Research Council AdG-2011-294429Medical Research Council MC_EX_MR/K02440X/1NCATS NIH HHS UL1 TR001863
6 · The paper itself

Abstract

backgroundThe Plasmodium falciparum reticulocyte binding protein homolog 2b (PfRh2b) is an important P. falciparum merozoite ligand that mediates invasion of erythrocytes by interacting with a chymotrypsin-sensitive "receptor Z". A large deletion polymorphism is found in the c-terminal ectodomain of this protein in many countries around the world, resulting in a truncated, but expressed protein. The varying frequencies by region suggest that there could be region specific immune selection at this locus. Therefore, this study was designed to determine temporal changes in the PfRh2b deletion polymorphism in infected individuals from Thiès (Senegal) and Western Gambia (The Gambia). It was also sought to determine the selective pressures acting at this locus and whether prevalence of the deletion in isolates genotyped by a 24-SNP molecular barcode is linked to background genotype or whether there might be independent selection acting at this locus.

methodsInfected blood samples were sourced from archives of previous studies conducted between 2007 and 2013 at SLAP clinic in Thiès and from 1984 to 2013 in Western Gambia by MRC Unit at LSHTM, The Gambia. A total of 1380 samples were screened for the dimorphic alleles of the PfRh2b using semi-nested Polymerase Chain Reaction PCR. Samples from Thiès were previously barcoded.

resultsIn Thiès, a consistent trend of decreasing prevalence of the PfRh2b deletion over time was observed: from 66.54% in 2007 and to 38.1% in 2013. In contrast, in Western Gambia, the frequency of the deletion fluctuated over time; it increased between 1984 and 2005 from (58.04%) to (69.33%) and decreased to 47.47% in 2007. Between 2007 and 2012, the prevalence of this deletion increased significantly from 47.47 to 83.02% and finally declined significantly to 57.94% in 2013. Association between the presence of this deletion and age was found in Thiès, however, not in Western Gambia. For the majority of isolates, the PfRh2b alleles could be tracked with specific 24-SNP barcoded genotype, indicating a lack of independent selection at this locus.

conclusionPfRh2b deletion was found in the two countries with varying prevalence during the study period. However, these temporal and spatial variations could be an obstacle to the implementation of this protein as a potential vaccine candidate.

Indexed as

Base SequencePolymorphism, Single NucleotideSelection, GeneticSequence DeletionGambiaHumansPlasmodium falciparumProtozoan ProteinsSeasonsSenegalProtozoan ProteinsRh2b protein, Plasmodium falciparumGambiaPfRh2bPlasmodium falciparumSenegalSNPs

Identifiers

PMID31311552
PMCPMC6636118

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.