Evidence map›Paper›PMID 31311534›Full record

ArticleBMC biology2019

RNA processing errors triggered by cadmium and integrator complex disruption are signals for environmental stress.

Cheng-Wei Wu, Keon Wimberly, Adele Pietras, William Dodd, M Blake Atlas, Keith P Choe

Open access · goldAbstract read
In one paragraph

Article in BMC biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
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  8. Chemical Genetics inACS chemical biology · 2024
    Article
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  12. Review
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  14. Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. The Integrator Complex in Transcription and Development.Trends in biochemical sciences · 2020
    Review
  20. Gel-free genotyping of deletion alleles inmicroPublication biology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Cheng-Wei WuDepartment of Veterinary Biomedical Sciences, Western College of Veterinary Medicine, University of Saskatchewan, 52 Campus Drive, Saskatoon, SK, S7N 5B4, Canada. michael.wu@usask.ca.ORCID 0000-0001-6370-429X
Keon WimberlyDepartment of Biology and Genetics Institute, University of Florida, Gainesville, FL, 32611, USA.
Adele PietrasDepartment of Biology and Genetics Institute, University of Florida, Gainesville, FL, 32611, USA.
William DoddDepartment of Biology and Genetics Institute, University of Florida, Gainesville, FL, 32611, USA.
M Blake AtlasDepartment of Biology and Genetics Institute, University of Florida, Gainesville, FL, 32611, USA.
Keith P ChoeDepartment of Biology and Genetics Institute, University of Florida, Gainesville, FL, 32611, USA. kchoe@ufl.edu.
University of Florida · USUniversity of Saskatchewan · CA

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
NIH HHS P40 OD010440
6 · The paper itself

Abstract

backgroundAdaptive responses to stress are essential for cell and organismal survival. In metazoans, little is known about the impact of environmental stress on RNA homeostasis.

resultsBy studying the regulation of a cadmium-induced gene named numr-1 in Caenorhabditis elegans, we discovered that disruption of RNA processing acts as a signal for environmental stress. We find that NUMR-1 contains motifs common to RNA splicing factors and influences RNA splicing in vivo. A genome-wide screen reveals that numr-1 is strongly and specifically induced by silencing of genes that function in basal RNA metabolism including subunits of the metazoan integrator complex. Human integrator processes snRNAs for functioning with splicing factors, and we find that silencing of C. elegans integrator subunits disrupts snRNA processing, causes aberrant pre-mRNA splicing, and induces the heat shock response. Cadmium, which also strongly induces numr-1, has similar effects on RNA and the heat shock response. Lastly, we find that heat shock factor-1 is required for full numr-1 induction by cadmium.

conclusionOur results are consistent with a model in which disruption of integrator processing of RNA acts as a molecular damage signal initiating an adaptive stress response mediated by heat shock factor-1. When numr-1 is induced via this pathway in C. elegans, its function in RNA metabolism may allow it to mitigate further damage and thereby promote tolerance to cadmium.

Indexed as

Gene Expression RegulationRNA SplicingAnimalsCadmiumCaenorhabditis elegansCaenorhabditis elegans ProteinsHeat-Shock ResponseNuclear ProteinsRNA Processing, Post-TranscriptionalRNA, Small NuclearRNA Splicing FactorsStress, PhysiologicalCadmiumCaenorhabditis elegans ProteinsNuclear ProteinsNumr-1 protein, C elegansRNA, Small NuclearRNA Splicing FactorsCadmiumCaenorhabditis elegansRNA splicingsnRNAStress responseSurveillance mechanism

Identifiers

PMID31311534
PMCPMC6631800
OpenAlexW2961972373

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.