Evidence map›Paper›PMID 31310308›Full record

ArticleNucleic acids research2019

Specificity of protein-DNA interactions in hypersaline environment: structural studies on complexes of Halobacterium salinarum oxidative stress-dependent protein hsRosR.

Nitzan Kutnowski, Fania Shmulevich, Geula Davidov, Anat Shahar, Dudy Bar-Zvi, Jerry Eichler, Raz Zarivach, Boaz Shaanan

Open access · greenAbstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Nitzan KutnowskiDepartment of Life Sciences, Ben-Gurion University of the Negev, Beer Sheva 8410510, Israel.
Fania ShmulevichDepartment of Life Sciences, Ben-Gurion University of the Negev, Beer Sheva 8410510, Israel.
Geula DavidovDepartment of Life Sciences, Ben-Gurion University of the Negev, Beer Sheva 8410510, Israel.
Anat ShaharMacromolecular Crystallography Research Center, National Institute of Biotechnology in the Negev, Ben-Gurion University, Beer Sheva 8410510, Israel.
Dudy Bar-ZviDepartment of Life Sciences, Ben-Gurion University of the Negev, Beer Sheva 8410510, Israel.
Jerry EichlerDepartment of Life Sciences, Ben-Gurion University of the Negev, Beer Sheva 8410510, Israel.
Raz ZarivachDepartment of Life Sciences, Ben-Gurion University of the Negev, Beer Sheva 8410510, Israel.
Boaz ShaananDepartment of Life Sciences, Ben-Gurion University of the Negev, Beer Sheva 8410510, Israel.
Ben-Gurion University of the Negev · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Interactions between proteins and DNA are crucial for all biological systems. Many studies have shown the dependence of protein-DNA interactions on the surrounding salt concentration. How these interactions are maintained in the hypersaline environments that halophiles inhabit remains puzzling. Towards solving this enigma, we identified the DNA motif recognized by the Halobactrium salinarum ROS-dependent transcription factor (hsRosR), determined the structure of several hsRosR-DNA complexes and investigated the DNA-binding process under extreme high-salt conditions. The picture that emerges from this work contributes to our understanding of the principles underlying the interplay between electrostatic interactions and salt-mediated protein-DNA interactions in an ionic environment characterized by molar salt concentrations.

Indexed as

Archaeal ProteinsBase SequenceBinding SitesCloning, MolecularCrystallography, X-RayDNA, ArchaealGene ExpressionGenetic VectorsHalobacterium salinarumHaloferaxKineticsModels, MolecularNucleic Acid ConformationPotassium ChlorideProtein BindingProtein Conformation, alpha-HelicalArchaeal ProteinsDNA, ArchaealPotassium ChlorideReactive Oxygen SpeciesRecombinant ProteinsTranscription Factors

Identifiers

PMID31310308
PMCPMC7145548
OpenAlexW2961974730

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.