Evidence map›Paper›PMID 31309408›Full record

ArticleJournal of neurovirology2019

Polymorphisms in CAMKK2 associate with susceptibility to sensory neuropathy in HIV patients treated without stavudine.

Jessica Gaff, Fitri Octaviana, Ibnu Ariyanto, Catherine Cherry, Simon M Laws, Patricia Price

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Journal of neurovirology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Muscarinic Toxin 7 Signals Via CaMolecular neurobiology · 2020
    Article
  4. International journal of molecular sciences · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 3 countries.

Jessica GaffSchool of Pharmacy and Biomedical Science, Curtin University, Bentley, Australia.
Fitri OctavianaNeurology Department, Faculty of Medicine, Universitas Indonesia, Jakarta, Indonesia.
Ibnu AriyantoVirology and Cancer Pathobiology Research Center, Universitas Indonesia, Jakarta, Indonesia.
Catherine CherryDepartment of Infectious Diseases, Alfred Health and Monash University, Melbourne, Australia.
Simon M LawsSchool of Pharmacy and Biomedical Science, Curtin University, Bentley, Australia.
Patricia PriceSchool of Pharmacy and Biomedical Science, Curtin University, Bentley, Australia. patricia.price@curtin.edu.au.ORCID 0000-0003-3078-4451
University of Indonesia · IDBurnet Institute · AUCurtin University · AUEdith Cowan University · AUUniversity of the Witwatersrand · ZA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

HIV-associated sensory neuropathy (HIV-SN) is a debilitating neurological complication of HIV infection potentiated by the antiretroviral drug stavudine. While stavudine is no longer used, HIV-SN now affects around 15% of HIV+ Indonesians. Here, we investigate whether polymorphisms within the P2X-block (P2X4R, P2X7R, CAMKK2) and/or ANAPC5 mark susceptibility to HIV-SN in this setting. As polymorphisms in these genes associated with HIV-SN in African HIV patients receiving stavudine, the comparison can identify mechanisms independent of stavudine. HIV patients who had never used stavudine (n = 202) attending clinics in Jakarta were screened for neuropathy using the AIDS Clinical Trials Group Brief Peripheral Neuropathy Screen. Open-array technology was used to type 48 polymorphisms spanning the four genes. Haplotypes were derived for each gene using fastPHASE. Haplogroups were constructed with median-joining methods. Multivariable models optimally predicting HIV-SN were based on factors achieving p < 0.2 in bivariate analyses. Minor alleles of three co-inherited polymorphisms in CAMKK2 (rs7975295*C, rs1560568*A, rs1132780*T) associated with a reduced prevalence of HIV-SN individually and after adjusting for lower CD4 T cell count and viremia (p = 0.0002, pseudo R

Indexed as

AdultAnti-HIV AgentsCalcium-Calmodulin-Dependent Protein Kinase KinaseFemaleGenetic Predisposition to DiseaseHIV InfectionsHumansMaleMiddle AgedPeripheral Nervous System DiseasesPolymorphism, Single NucleotidePrevalenceStavudineAnti-HIV AgentsCalcium-Calmodulin-Dependent Protein Kinase KinaseCAMKK2 protein, humanStavudineCAMKK2HIVIndonesiaSensory neuropathySingle nucleotide polymorphisms

Identifiers

PMID31309408
OpenAlexW2961412168

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.