Evidence map›Paper›PMID 31309227›Full record

ArticlePoultry science2019

A genomic inference of the White Plymouth Rock genealogy.

Y Guo, M Lillie, Y Zan, J Beranger, A Martin, C F Honaker, P B Siegel, Ö Carlborg

Abstract read
In one paragraph

Article in Poultry science, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Y GuoDepartment of Medical Biochemistry and Microbiology, Uppsala University, Uppsala 75123, Sweden.
M LillieDepartment of Medical Biochemistry and Microbiology, Uppsala University, Uppsala 75123, Sweden.
Y ZanDepartment of Medical Biochemistry and Microbiology, Uppsala University, Uppsala 75123, Sweden.
J BerangerThe Livestock Conservancy, Pittsboro, NC 27312.
A MartinThe Livestock Conservancy, Pittsboro, NC 27312.
C F HonakerDepartment of Animal and Poultry Sciences, Virginia Tech, Blacksburg, VA 24061.
P B SiegelDepartment of Animal and Poultry Sciences, Virginia Tech, Blacksburg, VA 24061.
Ö CarlborgDepartment of Medical Biochemistry and Microbiology, Uppsala University, Uppsala 75123, Sweden.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Crossing of populations has been, and still is, a central component in domestication and breed and variety formation. It is a way for breeders to utilize heterosis and to introduce new genetic variation into existing plant and livestock populations. During the mid-19th century, several chicken breeds that had been introduced to America from Europe and Asia became the founders for those formed in the USA. Historical records about the genealogy of these populations are often unclear and inconsistent. Here, we used genomics in an attempt to describe the ancestry of the White Plymouth Rock (WPR) chicken. In total, 150 chickens from the WPR and 8 other stocks that historical records suggested contributed to its formation were whole-genome re-sequenced. The admixture analyses of the autosomal and sex chromosomes showed that the WPR was likely founded as a cross between a paternal lineage that was primarily Dominique, and a maternal lineage where Black Java and Cochin contributed in essentially equal proportions. These results were consistent and provided quantification with the historical records that they were the main contributors to the WPR. The genomic analyses also revealed genome-wide contributions (<10% each) by Brahma, Langshan, and Black Minorca. When viewed on an individual chromosomal basis, contributions varied considerably among stocks.

Indexed as

BreedingGenetic VariationGenomeAnimalsChickensGenomicsSpecies Specificityadmixtureancestrychickensdomesticationphenotype–genotype interface

Identifiers

PMID31309227
PMCPMC6863967

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.