Evidence map›Paper›PMID 31308549›Full record

ArticleNature methods2019

High-affinity free ubiquitin sensors for quantifying ubiquitin homeostasis and deubiquitination.

Yun-Seok Choi, Sarah A Bollinger, Luisa F Prada, Francesco Scavone, Tingting Yao, Robert E Cohen

Abstract read
In one paragraph

Article in Nature methods, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Real-Time Deubiquitination Assays Using a Free Ubiquitin Sensor.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  8. Article
  9. Article
  10. Probing protein ubiquitination in live cells.Nucleic acids research · 2022
    Article
  11. Article
  12. Role of the Ubiquitin System in Stress Granule Metabolism.International journal of molecular sciences · 2022
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Yun-Seok ChoiDepartment of Biochemistry & Molecular Biology, Colorado State University, Fort Collins, CO, USA.
Sarah A BollingerDepartment of Biochemistry & Molecular Biology, Colorado State University, Fort Collins, CO, USA.
Luisa F PradaDepartment of Biochemistry & Molecular Biology, Colorado State University, Fort Collins, CO, USA.
Francesco ScavoneDepartment of Biochemistry & Molecular Biology, Colorado State University, Fort Collins, CO, USA.
Tingting YaoDepartment of Biochemistry & Molecular Biology, Colorado State University, Fort Collins, CO, USA.
Robert E CohenDepartment of Biochemistry & Molecular Biology, Colorado State University, Fort Collins, CO, USA. bob.cohen@colostate.edu.ORCID http://orcid.org/0000-0001-7397-4138
Colorado State University · US

Funding

Regulation of a Deubiquitinating Enzyme in Proteolysis and Chromatin RemodelingR01GM098401 · NIGMS · COLORADO STATE UNIVERSITY · PI YAO, TINGTING · 2011 to 2021
$2.9M
Quantitation of Ubiquitin Dynamics and HomeostasisR01GM115997 · NIGMS · COLORADO STATE UNIVERSITY · PI COHEN, ROBERT · 2015 to 2018
$2.0M
Live-Cell sensors for histone ubiquitinationR21ES029150 · NIEHS · COLORADO STATE UNIVERSITY · PI COHEN, ROBERT, YAO, TINGTING · 2018 to 2019
$418k
NIEHS NIH HHS R21 ES029150NIGMS NIH HHS R01 GM098401NIGMS NIH HHS R01 GM115997
6 · The paper itself

Abstract

Ubiquitin (Ub) conjugation is an essential post-translational modification that affects nearly all proteins in eukaryotes. The functions and mechanisms of ubiquitination are areas of extensive study, and yet the dynamics and regulation of even free (that is, unconjugated) Ub are poorly understood. A major impediment has been the lack of simple and robust techniques to quantify Ub levels in cells and to monitor Ub release from conjugates. Here, we describe avidity-based fluorescent sensors that address this need. The sensors bind specifically to free Ub, have dissociation constant K

Indexed as

Biosensing TechniquesHomeostasisProtein Processing, Post-TranslationalUbiquitinationHeLa CellsHumansProtein BindingProtein ConformationProteinsUbiquitinProteinsUbiquitin

Identifiers

PMID31308549
PMCPMC6669086
OpenAlexW2958599763

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.