Evidence map›Paper›PMID 31308547›Full record

ArticleNature methods2019

A genetically encoded fluorescent sensor for in vivo imaging of GABA.

Jonathan S Marvin, Yoshiteru Shimoda, Vincent Magloire, Marco Leite, Takashi Kawashima, Thomas P Jensen, Ilya Kolb, Erika L Knott, Ondrej Novak, Kaspar Podgorski and 5 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature methods, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 225 papers.

0numbers the graph read from it
0cells of the map it votes in
225citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

225 citing papers in PubMed.

  1. Review
  2. Review
  3. Dopaminergic hypersensitivity of the opioid-responsive striatal-entopeduncular pathway in a rodent model of restless legs syndrome.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2026
    Article
  4. Article
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  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Disinhibition of ventral tegmental area during initial punishment learning causes enduring punishment insensitivity.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2026
    Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

165 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Jonathan S MarvinJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.ORCID http://orcid.org/0000-0003-2294-4515
Yoshiteru ShimodaUCL Queen Square Institute of Neurology, University College London, London, UK.
Vincent MagloireUCL Queen Square Institute of Neurology, University College London, London, UK.ORCID http://orcid.org/0000-0003-4006-7042
Marco LeiteUCL Queen Square Institute of Neurology, University College London, London, UK.
Takashi KawashimaJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.
Thomas P JensenUCL Queen Square Institute of Neurology, University College London, London, UK.ORCID http://orcid.org/0000-0002-2560-6784
Ilya KolbJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.
Erika L KnottLouisiana State University Health Sciences Center, Shreveport, LA, USA.
Ondrej NovakJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.
Kaspar PodgorskiJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.ORCID http://orcid.org/0000-0002-0374-2005
Nancy J LeidenheimerLouisiana State University Health Sciences Center, Shreveport, LA, USA.
Dmitri A RusakovUCL Queen Square Institute of Neurology, University College London, London, UK.ORCID http://orcid.org/0000-0001-9539-9947
Misha B AhrensJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.ORCID http://orcid.org/0000-0002-3457-4462
Dimitri M KullmannUCL Queen Square Institute of Neurology, University College London, London, UK.ORCID http://orcid.org/0000-0001-6696-3545
Loren L LoogerJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA. loogerl@hhmi.org.ORCID http://orcid.org/0000-0002-7531-1757

Funding

Medical Research Council G116/147Medical Research Council MR/L01095X/1Wellcome Trust 095580/Z/11/ZWellcome Trust 209807/Z/17/ZWellcome Trust 212251/Z/18/ZWellcome Trust 212285/Z/18/Z
6 · The paper itself

Abstract

Current techniques for monitoring GABA (γ-aminobutyric acid), the primary inhibitory neurotransmitter in vertebrates, cannot follow transients in intact neural circuits. To develop a GABA sensor, we applied the design principles used to create the fluorescent glutamate receptor iGluSnFR. We used a protein derived from a previously unsequenced Pseudomonas fluorescens strain and performed structure-guided mutagenesis and library screening to obtain intensity-based GABA sensing fluorescence reporter (iGABASnFR) variants. iGABASnFR is genetically encoded, detects GABA release evoked by electric stimulation of afferent fibers in acute brain slices and produces readily detectable fluorescence increases in vivo in mice and zebrafish. We applied iGABASnFR to track mitochondrial GABA content and its modulation by an anticonvulsant, swimming-evoked, GABA-mediated transmission in zebrafish cerebellum, GABA release events during interictal spikes and seizures in awake mice, and found that GABA-mediated tone decreases during isoflurane anesthesia.

Indexed as

AnesthesiaAnimalsAnimals, Genetically ModifiedBiosensing TechniquesBrainFemalegamma-Aminobutyric AcidGreen Fluorescent ProteinsHippocampusMaleMiceMice, Inbred C57BLMolecular ImagingNeuronsRatsRats, Sprague-Dawleygamma-Aminobutyric AcidGreen Fluorescent Proteins

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.