Evidence map›Paper›PMID 31308451›Full record

ArticleScientific reports2019

Cell type specific transcriptional reprogramming of maize leaves during Ustilago maydis induced tumor formation.

Mitzi Villajuana-Bonequi, Alexandra Matei, Corinna Ernst, Asis Hallab, Björn Usadel, Gunther Doehlemann

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Genome-Wide Characterization of the Maize (International journal of molecular sciences · 2023
    Article
  6. Article
  7. Article
  8. Early infection response of fungal biotrophFrontiers in plant science · 2022
    Article
  9. Article
  10. Review
  11. UnderstandingJournal of fungi (Basel, Switzerland) · 2020
    Review
  12. Review
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Mitzi Villajuana-BonequiBotanical Institute and Cluster of Excellence on Plant Sciences (CEPLAS), BioCenter, University of Cologne, Zülpicher Str. 47a, Cologne, 50674, Germany.
Alexandra MateiBotanical Institute and Cluster of Excellence on Plant Sciences (CEPLAS), BioCenter, University of Cologne, Zülpicher Str. 47a, Cologne, 50674, Germany.
Corinna ErnstCenter for Familial Breast and Ovarian Cancer, Medical Faculty, University Hospital Cologne, University of Cologne, Cologne, 50931, Germany.ORCID http://orcid.org/0000-0001-7756-8815
Asis HallabBioSC, IBG-2, Institute of Botany, RWTH Aachen, Worringer Weg 3, Aachen, 52074, Germany.
Björn UsadelBioSC, IBG-2, Institute of Botany, RWTH Aachen, Worringer Weg 3, Aachen, 52074, Germany.
Gunther DoehlemannBotanical Institute and Cluster of Excellence on Plant Sciences (CEPLAS), BioCenter, University of Cologne, Zülpicher Str. 47a, Cologne, 50674, Germany. g.doehlemann@uni-koeln.de.ORCID http://orcid.org/0000-0002-7353-8456
University of Cologne · DERWTH Aachen University · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ustilago maydis is a biotrophic pathogen and well-established genetic model to understand the molecular basis of biotrophic interactions. U. maydis suppresses plant defense and induces tumors on all aerial parts of its host plant maize. In a previous study we found that U. maydis induced leaf tumor formation builds on two major processes: the induction of hypertrophy in the mesophyll and the induction of cell division (hyperplasia) in the bundle sheath. In this study we analyzed the cell-type specific transcriptome of maize leaves 4 days post infection. This analysis allowed identification of key features underlying the hypertrophic and hyperplasic cell identities derived from mesophyll and bundle sheath cells, respectively. We examined the differentially expressed (DE) genes with particular focus on maize cell cycle genes and found that three A-type cyclins, one B-, D- and T-type are upregulated in the hyperplasic tumorous cells, in which the U. maydis effector protein See1 promotes cell division. Additionally, most of the proteins involved in the formation of the pre-replication complex (pre-RC, that assure that each daughter cell receives identic DNA copies), the transcription factors E2F and DPa as well as several D-type cyclins are deregulated in the hypertrophic cells.

Indexed as

Cell DivisionCell EnlargementGene Expression Regulation, PlantHost-Pathogen InteractionsPlant DiseasesPlant LeavesPlant TumorsTranscriptional ActivationTranscriptomeUstilagoZea mays

Identifiers

PMID31308451
PMCPMC6629649
OpenAlexW2956526744

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.