Evidence map›Paper›PMID 31307517›Full record

ArticleParasites & vectors2019

Genetic homogeneity of Anopheles maculatus in Indonesia and origin of a novel species present in Central Java.

Triwibowo Ambar Garjito, Umi Widiastuti, Mujiyono Mujiyono, Mega Tyas Prihatin, Widiarti Widiarti, Riyani Setyaningsih, Siti Alfiah, Barandi Sapta Widartono, Din Syafruddin, Tri Baskoro Tunggul Satoto and 4 more

Abstract read
In one paragraph

Article in Parasites & vectors, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Triwibowo Ambar GarjitoInstitute for Vector and Reservoir Control Research and Development, National Institute of Health Research and Development, The Ministry of Health of Indonesia, Salatiga, Central Java, Indonesia. triwibowo@litbang.depkes.go.id.ORCID http://orcid.org/0000-0002-7697-9759
Umi WidiastutiInstitute for Vector and Reservoir Control Research and Development, National Institute of Health Research and Development, The Ministry of Health of Indonesia, Salatiga, Central Java, Indonesia.
Mujiyono MujiyonoInstitute for Vector and Reservoir Control Research and Development, National Institute of Health Research and Development, The Ministry of Health of Indonesia, Salatiga, Central Java, Indonesia.
Mega Tyas PrihatinInstitute for Vector and Reservoir Control Research and Development, National Institute of Health Research and Development, The Ministry of Health of Indonesia, Salatiga, Central Java, Indonesia.
Widiarti WidiartiInstitute for Vector and Reservoir Control Research and Development, National Institute of Health Research and Development, The Ministry of Health of Indonesia, Salatiga, Central Java, Indonesia.
Riyani SetyaningsihInstitute for Vector and Reservoir Control Research and Development, National Institute of Health Research and Development, The Ministry of Health of Indonesia, Salatiga, Central Java, Indonesia.
Siti AlfiahInstitute for Vector and Reservoir Control Research and Development, National Institute of Health Research and Development, The Ministry of Health of Indonesia, Salatiga, Central Java, Indonesia.
Barandi Sapta WidartonoDepartment of Geographical Information System, Faculty of Geography, Gadjah Mada University, Yogyakarta, Indonesia.
Din SyafruddinEijkman Institute for Molecular Biology, Jakarta, Indonesia.
Tri Baskoro Tunggul SatotoDepartment of Parasitology, Faculty of Medicine, Public Health and Nursing, Gadjah Mada University, Yogyakarta, Indonesia.
Laurent GavotteISEM, University of Montpellier, Montpellier, France.
Michael J BangsPublic Health & Malaria Control, International SOS/PT. Freeport Indonesia, Kuala Kencana, Indonesia.
Sylvie ManguinUniversity of Montpellier, Montpellier, France.
Roger FrutosUniversity of Montpellier, Montpellier, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAnopheles maculatus (s.s.) is an important vector of malaria in Indonesia. Previously it was considered the only member of the Maculatus Group present in Indonesia. A novel species was recently identified in the Kulon Progo District in Central Java. Until recently, few investigations have been conducted looking at An. maculatus genetic diversity in Indonesia, including allopatric island populations.

methodsIndonesian An. maculatus (s.l.) samples were collected in several locations in Java, Lesser Sunda Island group, Sumatra and in Kulon Progo (Yogyakarta, central Java) where a novel species has been identified. Samples from a 30-year-old colony of the Kulon Progo population were also included in the analysis. Maximum-likelihood analysis established the phylogenies of the ITS2 (nuclear) and cox1 (mitochondrial) markers. Putative times of separation were based on cox1 genetic distances.

resultsTwo species of the Maculatus Group are present in Indonesia. The novel sibling species is more closely related to Anopheles dispar than to An. maculatus (s.s.). Anopheles maculatus (s.s.) samples are homogeneous based on the ITS2 sequences. Indonesian samples and An. dispar belong to the same cox1 maternal lineage and differ from all other known members of the Maculatus Group. Divergence time between the different populations found in Java was estimated using an established cox1 mutation rate.

conclusionsA novel species within the Maculatus Group, most closely related to An. dispar, is confirmed present in the Kulon Progo area of Central Java. The divergence of this species from An. maculatus (s.s.) is explained by the stable refugia in the Kulon Progo area during the quaternary period of intense volcanic activity throughout most of Java. This novel species awaits detailed morphological description before applying a formal species name. For the interim, it is proposed that the Kulon Progo population be designated An. maculatus var. menoreh to distinguish it from An. maculatus (s.s.).

Indexed as

Genetic VariationPhylogenyAnimalsAnophelesCyclooxygenase 1DNA, IntergenicIndonesiaIslandsMalariaMosquito VectorsMutationCyclooxygenase 1DNA, IntergenicAnopheles maculatusIndonesiaMaculatus GroupMalaria

Identifiers

PMID31307517
PMCPMC6631912

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.