Evidence map›Paper›PMID 31307392›Full record

ArticleBMC developmental biology2019

Role of PRY-1/Axin in heterochronic miRNA-mediated seam cell development.

Avijit Mallick, Ayush Ranawade, Bhagwati P Gupta

Open access · hybridAbstract read
In one paragraph

Article in BMC developmental biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
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  3. Article
  4. Article
  5. Review
  6. Article
  7. The multifaceted roles of microRNAs in differentiation.Current opinion in cell biology · 2020
    Review
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Avijit MallickDepartment of Biology, McMaster University, ON L8S-4K1, Hamilton, Canada.ORCID http://orcid.org/0000-0002-9423-7134
Ayush RanawadeDepartment of Biology, McMaster University, ON L8S-4K1, Hamilton, Canada.
Bhagwati P GuptaDepartment of Biology, McMaster University, ON L8S-4K1, Hamilton, Canada. guptab@mcmaster.ca.ORCID http://orcid.org/0000-0001-8572-7054
McMaster University · CAHarvard University Press · US

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
NIH HHS P40 OD010440
6 · The paper itself

Abstract

backgroundCaenorhabditis elegans seam cells serve as a good model to understand how genes and signaling pathways interact to control asymmetric cell fates. The stage-specific pattern of seam cell division is coordinated by a genetic network that includes WNT asymmetry pathway components WRM-1, LIT-1, and POP-1, as well as heterochronic microRNAs (miRNAs) and their downstream targets. Mutations in pry-1, a negative regulator of WNT signaling that belongs to the Axin family, were shown to cause seam cell defects; however, the mechanism of PRY-1 action and its interactions with miRNAs remain unclear.

resultsWe found that pry-1 mutants in C. elegans exhibit seam cell, cuticle, and alae defects. To examine this further, a miRNA transcriptome analysis was carried out, which showed that let-7 (miR-48, miR-84, miR-241) and lin-4 (lin-4, miR-237) family members were upregulated in the absence of pry-1 function. Similar phenotypes and patterns of miRNA overexpression were also observed in C. briggsae pry-1 mutants, a species that is closely related to C. elegans. RNA interference-mediated silencing of wrm-1 and lit-1 in the C. elegans pry-1 mutants rescued the seam cell defect, whereas pop-1 silencing enhanced the phenotype, suggesting that all three proteins are likely important for PRY-1 function in seam cells. We also found that these miRNAs were overexpressed in pop-1 hypomorphic animals, suggesting that PRY-1 may be required for POP-1-mediated miRNA suppression. Analysis of the let-7 and lin-4-family heterochronic targets, lin-28 and hbl-1, showed that both genes were significantly downregulated in pry-1 mutants, and furthermore, lin-28 silencing reduced the number of seam cells in mutant animals.

conclusionsOur results show that PRY-1 plays a conserved role to maintain normal expression of heterochronic miRNAs in nematodes. Furthermore, we demonstrated that PRY-1 acts upstream of the WNT asymmetry pathway components WRM-1, LIT-1, and POP-1, and miRNA target genes in seam cell development.

Indexed as

AnimalsAxin ProteinCaenorhabditis elegansCaenorhabditis elegans ProteinsCell DifferentiationCytoskeletal ProteinsDNA-Binding ProteinsHigh Mobility Group ProteinsMembrane ProteinsMicroRNAsProtein Serine-Threonine KinasesRepressor ProteinsRNA InterferenceRNA, Small InterferingTranscription FactorsWnt Signaling PathwayAxin ProteinCaenorhabditis elegans ProteinsCytoskeletal ProteinsDNA-Binding Proteinshbl-1 protein, C elegansHigh Mobility Group Proteinslet-7 microRNA, C elegansLIN-28 protein, C eleganslin-4 microRNA, C eleganslit-1 protein, C elegansMembrane ProteinsMicroRNAspop-1 protein, C elegansProtein Serine-Threonine KinasesPry-1 protein, C elegansRepressor ProteinsRNA, Small InterferingTranscription FactorsWRM-1 protein, C elegansAxinC. briggsaeC. elegansHeterochronic developmentmiRNAPry-1Seam cellWNT asymmetry pathway

Identifiers

PMID31307392
PMCPMC6631683
OpenAlexW2957769456

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.