Evidence map›Paper›PMID 31306584›Full record

ArticleFASEB journal : official publication of the Federation of American Societies for Experimental Biology2019

The gut microbiome alters immunophenotype and survival from sepsis.

Katherine T Fay, Nathan J Klingensmith, Ching-Wen Chen, Wenxiao Zhang, Yini Sun, Kristen N Morrow, Zhe Liang, Eileen M Burd, Mandy L Ford, Craig M Coopersmith

Abstract read
In one paragraph

Article in FASEB journal : official publication of the Federation of American Societies for Experimental Biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 2 syntheses or guidelines pooled it.

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  20. Claudin-2 upregulation enhances intestinal permeability, immune activation, dysbiosis, and mortality in sepsis.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Katherine T FayDepartment of Surgery, Emory Critical Care Center, Atlanta, Georgia, USA.
Nathan J KlingensmithDepartment of Surgery, Emory Critical Care Center, Atlanta, Georgia, USA.
Ching-Wen ChenDepartment of Surgery, Emory Critical Care Center, Atlanta, Georgia, USA.
Wenxiao ZhangDepartment of Surgery, Emory Critical Care Center, Atlanta, Georgia, USA.
Yini SunDepartment of Surgery, Emory Critical Care Center, Atlanta, Georgia, USA.
Kristen N MorrowDepartment of Surgery, Emory Critical Care Center, Atlanta, Georgia, USA.
Zhe LiangDepartment of Surgery, Emory Critical Care Center, Atlanta, Georgia, USA.
Eileen M BurdDepartment of Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, Georgia, USA.
Mandy L Ford *Department of Surgery, Emory Transplant Center, Emory University School of Medicine, Atlanta, Georgia, USA.
Craig M Coopersmith *Department of Surgery, Emory Critical Care Center, Atlanta, Georgia, USA.

Funding

Mechanisms of Intestinal Integrity in Sepsis and ShockR01GM072808 · NIGMS · WASHINGTON UNIVERSITY · PI COOPERSMITH, CRAIG M · 2005 to 2021
$5.1M
Critical Care Training ProgramT32GM095442 · NIGMS · EMORY UNIVERSITY · PI Craig M Coopersmith · 2011 to 2026
$4.7M
The Impact of Cancer on the Pathophysiology of SepsisR01GM104323 · NIGMS · EMORY UNIVERSITY · PI COOPERSMITH, CRAIG M, FORD, MANDY L · 2013 to 2021
$2.4M
The Impact of Chronic Alcohol Abuse on the Pathophysiology of SepsisR01GM109779 · NIGMS · EMORY UNIVERSITY · PI COOPERSMITH, CRAIG M, FORD, MANDY L · 2014 to 2017
$1.2M
Targeting 2B4 Coinhibitory Signals During Sepsis-Induced Immune DysregulationR01GM113228 · NIGMS · EMORY UNIVERSITY · PI COOPERSMITH, CRAIG M, FORD, MANDY L · 2015 to 2018
$1.2M
NIGMS NIH HHS R01 GM072808NIGMS NIH HHS R01 GM104323NIGMS NIH HHS R01 GM109779NIGMS NIH HHS R01 GM113228NIGMS NIH HHS T32 GM095442
6 · The paper itself

Abstract

The microbiome is increasingly implicated in immune regulation and mortality from sepsis. Mice with identical genetic backgrounds but distinct microbiomes were obtained from different vendors and analyzed following cecal ligation and puncture (CLP). β diversity of the microbiome measured from feces demonstrated significant differences between The Jackson Laboratory (Jax; Bar Harbor, ME, USA) and Charles River Laboratories (CR; Wilmington, MA, USA) C57/B6 mice. Jax mice had 7-d mortality of 90% following CLP, whereas CR mice had a mortality of 53%. Differences in vendor were associated with altered immunophenotype with increased splenic IFN-γ

Indexed as

AnimalsCD4-Positive T-LymphocytesFecesFemaleGastrointestinal MicrobiomeInterferon-gammaMaleMiceMice, Inbred C57BLMicrobiotaPeyer's PatchesSepsisInterferon-gammaCD4+ T cellscohousingintestinemicrobiotaT lymphocyte

Identifiers

PMID31306584
PMCPMC6766641

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.