Evidence map›Paper›PMID 31304633›Full record

ArticleThe EMBO journal2019

Conserved crosstalk between histone deacetylation and H3K79 methylation generates DOT1L-dose dependency in HDAC1-deficient thymic lymphoma.

Hanneke Vlaming, Chelsea M McLean, Tessy Korthout, Mir Farshid Alemdehy, Sjoerd Hendriks, Cesare Lancini, Sander Palit, Sjoerd Klarenbeek, Eliza Mari Kwesi-Maliepaard, Thom M Molenaar and 7 more

Open access · hybridAbstract read
In one paragraph

Article in The EMBO journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 42 citations in OpenAlex.

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  13. Signals for antigen-independent differentiation of memory CD8Cellular and molecular life sciences : CMLS · 2021
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  19. MCM5 Aggravates the HDAC1-Mediated Malignant Progression of Lung Cancer.Frontiers in cell and developmental biology · 2021
    Article
  20. The histone methyltransferase DOT1L prevents antigen-independent differentiation and safeguards epigenetic identity of CD8Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 2 institutions in 1 country.

Hanneke VlamingDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, The Netherlands.ORCID 0000-0003-1743-6428
Chelsea M McLeanDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Tessy KorthoutDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Mir Farshid AlemdehyDivision of Tumor Biology & Immunology, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Sjoerd HendriksDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Cesare LanciniDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Sander PalitDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Sjoerd KlarenbeekExperimental Animal Pathology, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Eliza Mari Kwesi-MaliepaardDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Thom M MolenaarDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Liesbeth HoekmanExperimental Animal Pathology, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Thierry T SchmidlinBiomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research, Utrecht Institute for Pharmaceutical Sciences, Utrecht University and Netherlands Proteomics Centre, Utrecht, The Netherlands.
Af Maarten AltelaarBiomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research, Utrecht Institute for Pharmaceutical Sciences, Utrecht University and Netherlands Proteomics Centre, Utrecht, The Netherlands.ORCID 0000-0001-5093-5945
Tibor van WelsemDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Jan-Hermen DannenbergDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Heinz JacobsDivision of Tumor Biology & Immunology, Netherlands Cancer Institute, Amsterdam, The Netherlands.ORCID 0000-0001-6227-9850
Fred van LeeuwenDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, The Netherlands.ORCID 0000-0002-7267-7251
The Netherlands Cancer Institute · NLUtrecht University · NL

Funding

KWF Kankerbestrijding (Dutch Cancer Society) KWF2009-4511KWF Kankerbestrijding (Dutch Cancer Society) NKI2014-7232Nederlandse Organisatie voor Wetenschappelijk Onderzoek (NWO) NCI-KIEM-731.013.102Nederlandse Organisatie voor Wetenschappelijk Onderzoek (NWO) NCI-LIFT-731.015.405Nederlandse Organisatie voor Wetenschappelijk Onderzoek (NWO) NWO-VICI-016.130.627ZonMw (Netherlands Organisation for Health Research and Development) Top 91213018
6 · The paper itself

Abstract

DOT1L methylates histone H3K79 and is aberrantly regulated in MLL-rearranged leukemia. Inhibitors have been developed to target DOT1L activity in leukemia, but cellular mechanisms that regulate DOT1L are still poorly understood. We have identified the histone deacetylase Rpd3 as a negative regulator of budding yeast Dot1. At its target genes, the transcriptional repressor Rpd3 restricts H3K79 methylation, explaining the absence of H3K79me3 at a subset of genes in the yeast genome. Similar to the crosstalk in yeast, inactivation of the murine Rpd3 homolog HDAC1 in thymocytes led to an increase in H3K79 methylation. Thymic lymphomas that arise upon genetic deletion of Hdac1 retained the increased H3K79 methylation and were sensitive to reduced DOT1L dosage. Furthermore, cell lines derived from Hdac1

Indexed as

AcetylationAnimalsCell Line, TumorGene DeletionHistone Deacetylase 1Histone Deacetylase 2Histone DeacetylasesHistone-Lysine N-MethyltransferaseHistonesHumansLymphomaMethylationMiceSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsThymus NeoplasmsDOT1L protein, humanHDAC1 protein, humanHDAC2 protein, humanHistone Deacetylase 1Histone Deacetylase 2Histone DeacetylasesHistone-Lysine N-MethyltransferaseHistonesRPD3 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsChromatinH3K79 methylationhistone acetylationhistone ubiquitinationlymphoma

Identifiers

PMID31304633
PMCPMC6627229
OpenAlexW2950557809

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.