Evidence map›Paper›PMID 31304628›Full record

ArticleThe EMBO journal2019

A specialised SKI complex assists the cytoplasmic RNA exosome in the absence of direct association with ribosomes.

Elodie Zhang, Varun Khanna, Estelle Dacheux, Abdelkader Namane, Antonia Doyen, Maïté Gomard, Bernard Turcotte, Alain Jacquier, Micheline Fromont-Racine

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Elodie ZhangGénétique des Interactions Macromoléculaires, Institut Pasteur, UMR3525 CNRS, Paris, France.
Varun KhannaGénétique des Interactions Macromoléculaires, Institut Pasteur, UMR3525 CNRS, Paris, France.
Estelle DacheuxGénétique des Interactions Macromoléculaires, Institut Pasteur, UMR3525 CNRS, Paris, France.
Abdelkader NamaneGénétique des Interactions Macromoléculaires, Institut Pasteur, UMR3525 CNRS, Paris, France.ORCID 0000-0001-7180-7619
Antonia DoyenGénétique des Interactions Macromoléculaires, Institut Pasteur, UMR3525 CNRS, Paris, France.
Maïté GomardGénétique des Interactions Macromoléculaires, Institut Pasteur, UMR3525 CNRS, Paris, France.
Bernard TurcotteDepartment of Medicine, McGill University Health Centre, Montréal, QC, Canada.
Alain JacquierGénétique des Interactions Macromoléculaires, Institut Pasteur, UMR3525 CNRS, Paris, France.ORCID 0000-0001-5707-9184
Micheline Fromont-RacineGénétique des Interactions Macromoléculaires, Institut Pasteur, UMR3525 CNRS, Paris, France.ORCID 0000-0001-9906-0334
Centre National de la Recherche Scientifique · FRMcGill University Health Centre · CA

Funding

Agence Nationale de la Recherche (ANR) ANR-14-CE-10-0014-01Agence Nationale de la Recherche (ANR) ANR-17-CE11-0049-01Centre National de la Recherche Scientifique (CNRS)Gouvernement du Canada | Natural Sciences and Engineering Research Council of Canada (NSERC) RGPIN/06406-2014Institut Pasteur
6 · The paper itself

Abstract

The Ski2-Ski3-Ski8 (SKI) complex assists the RNA exosome during the 3' to 5' degradation of cytoplasmic transcripts. Previous reports showed that the SKI complex is involved in the 3' to 5' degradation of mRNAs, including 3' untranslated regions (UTRs) and devoid of ribosomes. Paradoxically, we recently showed that the SKI complex directly interacts with ribosomes during the co-translational mRNA decay and that this interaction is necessary for its RNA degradation promoting activity. Here, we characterised a new SKI-associated factor, Ska1, that associates with a subpopulation of the SKI complex. We showed that Ska1 is specifically involved in the degradation of long 3'UTR-containing mRNAs, poorly translated mRNAs as well as other RNA regions not associated with ribosomes, such as cytoplasmic lncRNAs. We further show that the overexpression of SKA1 antagonises the SKI-ribosome association. We propose that the Ska1-SKI complex assists the cytoplasmic exosome in the absence of direct association of the SKI complex with ribosomes.

Indexed as

3' Untranslated Regions5' Untranslated RegionsCytoplasmExosome Multienzyme Ribonuclease ComplexRibosomesRNA, FungalRNA, Long NoncodingRNA, MessengerRNA StabilitySaccharomyces cerevisiaeSaccharomyces cerevisiae Proteins3' Untranslated Regions5' Untranslated RegionsExosome Multienzyme Ribonuclease ComplexRNA, FungalRNA, Long NoncodingRNA, MessengerSaccharomyces cerevisiae ProteinsexosomemRNA decay pathwayribosomeSaccharomyces cerevisiaeSKI complex

Identifiers

PMID31304628
PMCPMC6627227
OpenAlexW2952716537

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.