Evidence map›Paper›PMID 31304534›Full record

ArticleNucleic acids research2019

Zscan4c activates endogenous retrovirus MERVL and cleavage embryo genes.

Weiyu Zhang, Fuquan Chen, Ruiqing Chen, Dan Xie, Jiao Yang, Xin Zhao, Renpeng Guo, Yongwang Zhang, Yang Shen, Jonathan Göke and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
21.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 115 citations in OpenAlex.

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14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Weiyu ZhangState Key Laboratory of Medicinal Chemical Biology, Nankai University, Tianjin 300350, People's Republic of China.
Fuquan ChenState Key Laboratory of Medicinal Chemical Biology, Nankai University, Tianjin 300350, People's Republic of China.
Ruiqing ChenState Key Laboratory of Medicinal Chemical Biology, Nankai University, Tianjin 300350, People's Republic of China.
Dan XieState Key Laboratory of Medicinal Chemical Biology, Nankai University, Tianjin 300350, People's Republic of China.
Jiao YangState Key Laboratory of Medicinal Chemical Biology, Nankai University, Tianjin 300350, People's Republic of China.
Xin ZhaoState Key Laboratory of Medicinal Chemical Biology, Nankai University, Tianjin 300350, People's Republic of China.
Renpeng GuoState Key Laboratory of Medicinal Chemical Biology, Nankai University, Tianjin 300350, People's Republic of China.
Yongwang ZhangState Key Laboratory of Medicinal Chemical Biology, Nankai University, Tianjin 300350, People's Republic of China.
Yang ShenComputational and Systems Biology, Genome Institute of Singapore, Singapore 138672, Singapore.
Jonathan GökeComputational and Systems Biology, Genome Institute of Singapore, Singapore 138672, Singapore.
Lin LiuState Key Laboratory of Medicinal Chemical Biology, Nankai University, Tianjin 300350, People's Republic of China.
Xinyi LuState Key Laboratory of Medicinal Chemical Biology, Nankai University, Tianjin 300350, People's Republic of China.
Nankai University · CNGenome Institute of Singapore · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Endogenous retroviruses (ERVs) contribute to ∼10 percent of the mouse genome. They are often silenced in differentiated somatic cells but differentially expressed at various embryonic developmental stages. A minority of mouse embryonic stem cells (ESCs), like 2-cell cleavage embryos, highly express ERV MERVL. However, the role of ERVs and mechanism of their activation in these cells are still poorly understood. In this study, we investigated the regulation and function of the stage-specific expressed ERVs, with a particular focus on the totipotency marker MT2/MERVL. We show that the transcription factor Zscan4c functions as an activator of MT2/MERVL and 2-cell/4-cell embryo genes. Zinc finger domains of Zscan4c play an important role in this process. In addition, Zscan4c interacts with MT2 and regulates MT2-nearby 2-cell/4-cell genes through promoting enhancer activity of MT2. Furthermore, MT2 activation is accompanied by enhanced H3K4me1, H3K27ac, and H3K14ac deposition on MT2. Zscan4c also interacts with GBAF chromatin remodelling complex through SCAN domain to further activate MT2 enhancer activity. Taken together, we delineate a previously unrecognized regulatory axis that Zscan4c interacts with and activates MT2/MERVL loci and their nearby genes through epigenetic regulation.

Indexed as

Gene Expression Regulation, DevelopmentalGenomeRetroelementsAnimalsChromatinEmbryo, MammalianEndogenous RetrovirusesEnhancer Elements, GeneticEpigenesis, GeneticGene Expression ProfilingGene OntologyHistonesMiceMolecular Sequence AnnotationMouse Embryonic Stem CellsTranscription FactorsChromatinHistonesRetroelementsTranscription FactorsZscan4c protein, mouse

Identifiers

PMID31304534
PMCPMC7145578
OpenAlexW2961353701

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.