Evidence map›Paper›PMID 31302725›Full record

ArticleCurrent microbiology2019

Genome Analysis of Two Novel Lytic Vibrio maritimus Phages Isolated from the Coastal Surface Seawater of Qingdao, China.

Yuye Han, Min Wang, Qian Liu, Yundan Liu, Qi Wang, Xueping Duan, Lu Liu, Yong Jiang, Hongbing Shao, Cui Guo

Abstract read
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Article in Current microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yuye HanCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Min WangCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Qian LiuCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Yundan LiuCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Qi WangCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Xueping DuanCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Lu LiuCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Yong JiangCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Hongbing ShaoCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Cui GuoCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China. guocui@ouc.edu.cn.

Funding

Marine S&T Fund of Shandong Province for Pilot National Laboratory for Marine Science and Technology (Qingdao) No. 2018SDKJ0406-6Natural Science Foundation of China No. 31500339Natural Science Foundation of China No. 41076088Natural Science Foundation of China No. 41676178Qingdao National Laboratory for Marine Science and Technology (CN) No. 2016ASKJ14State Oceanic Administration People's republic of China No. GASI-02-PAC-ST-MSautState Oceanic Administration People's republic of China No. GASI-02-PAC-ST-MSwinThe Fundamental Research Funds for the Central Universities No. 201562018The Fundamental Research Funds for the Central Universities No. 201762017The Fundamental Research Funds for the Central Universities No. 201812002
6 · The paper itself

Abstract

Two novel Vibrio phages, LP.1 and LP.2 that infected Vibrio maritimus R-40493, were isolated from surface seawater in Qingdao coastal area by the double-agar layer method. Morphological analysis by transmission electron microscope showed that the two phages displayed head-tail structures with icosahedral heads of 62.37 and 54.00 nm in diameter and long non-contractile tails of 119.00 and 105.20 nm in length, respectively, and can be grouped into the Siphoviridae family. Thermal and pH sensitivity tests exhibited that LP.1 was stable at temperature ranging from - 20 to 65 °C and at pH ranging from 5 to 12, and LP.2 showed vitality over a wider range of temperature (- 20-75 °C) and pH (3-12). Both LP.1 and LP.2 contained linear and double-stranded DNA genomes with a length of 46,791-bp and 37,128-bp, respectively. The genome of both phages can be classified into four functional groups, including DNA replication and regulation, phage packaging, phage structure, and additional function. The bioinformatic analysis demonstrated that the Vibrio phages LP.1 and LP.2 are novel phages. By conducting morphological, biochemical, and genomic analysis, our study provides useful information for further research on the interaction between Vibrio phages and their host.

Indexed as

ChinaDNA, ViralGenome, ViralHost SpecificityPhylogenySeawaterSequence Analysis, DNASiphoviridaeVibrioViral ProteinsDNA, ViralViral Proteins

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.