Evidence map›Paper›PMID 31300889›Full record

ArticleArchives of virology2019

Coding-complete sequence of a vaccine-derived recombinant porcine reproductive and respiratory syndrome virus strain isolated in Hungary.

S Marton, D Szalay, S Kecskeméti, B Forró, F Olasz, Z Zádori, I Szabó, T Molnár, K Bányai, Á Bálint

Abstract read
In one paragraph

Article in Archives of virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

S MartonInstitute for Veterinary Medical Research, Centre for Agricultural Research, Hungarian Academy of Sciences, Hungária krt. 21, Budapest, 1143, Hungary.
D SzalayVeterinary Diagnostic Directorate, National Food Chain Safety Office, Tábornok u. 2, Budapest, 1149, Hungary.
S KecskemétiVeterinary Diagnostic Directorate, National Food Chain Safety Office, Tábornok u. 2, Budapest, 1149, Hungary.
B ForróInstitute for Veterinary Medical Research, Centre for Agricultural Research, Hungarian Academy of Sciences, Hungária krt. 21, Budapest, 1143, Hungary.
F OlaszInstitute for Veterinary Medical Research, Centre for Agricultural Research, Hungarian Academy of Sciences, Hungária krt. 21, Budapest, 1143, Hungary.
Z ZádoriInstitute for Veterinary Medical Research, Centre for Agricultural Research, Hungarian Academy of Sciences, Hungária krt. 21, Budapest, 1143, Hungary.
I SzabóNational Food Chain Safety Office, Budapest, Hungary.
T MolnárNational Food Chain Safety Office, Budapest, Hungary.
K BányaiInstitute for Veterinary Medical Research, Centre for Agricultural Research, Hungarian Academy of Sciences, Hungária krt. 21, Budapest, 1143, Hungary. bkrota@hotmail.com.ORCID http://orcid.org/0000-0002-6270-1772
Á BálintVeterinary Diagnostic Directorate, National Food Chain Safety Office, Tábornok u. 2, Budapest, 1149, Hungary. balintad@nebih.gov.hu.

Funding

Magyar Tudományos Akadémia Bolyai scholarshipMagyar Tudományos Akadémia MomentumNemzeti Kutatási Fejlesztési és Innovációs Hivatal K119381
6 · The paper itself

Abstract

Porcine reproductive and respiratory syndrome virus 1 is a major cause of swine morbidity and mortality in various parts of the world, including Hungary. A national elimination programme to reduce the associated economic burden was initiated in Hungary in 2012. Using extensive laboratory surveillance, we identified and isolated an unusual PRRSV strain. The complete coding sequence of this isolate was determined and analyzed. The genome of this Hungarian PRRSV1 strain, HUN60077/16, is 15,081 nucleotides in length. Phylogenetic and recombination analysis showed a mosaic structure of the genome where a large fragment of ORF1b and the genomic region coding for ORF3 to ORF7 showed a very close genetic relationship to the vaccine virus Unistrain, while the ORF1a region, the 3' end of ORF1b, and the whole ORF2 were only distantly related to this or any other PRRSV1 strain whose genome sequence is available in the GenBank database. Genomic characterization of PRRSV strains is crucial when possible vaccine-associated cases are identified. This approach not only helps to identify genetic interactions between vaccine and wild-type PRRSV1 strains but may also be needed to prevent trust in commercial vaccines from being undermined.

Indexed as

Genome, ViralPhylogenyRecombination, GeneticAnimalsGenotypeHungaryOpen Reading FramesPorcine Reproductive and Respiratory SyndromePorcine respiratory and reproductive syndrome virusSequence Analysis, DNASequence HomologySwineViral VaccinesViral Vaccines

Identifiers

PMID31300889
PMCPMC6732150

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.