Evidence map›Paper›PMID 31300678›Full record

ArticleScientific reports2019

The first clawed lobster virus Homarus gammarus nudivirus (HgNV n. sp.) expands the diversity of the Nudiviridae.

Corey C Holt, Michelle Stone, David Bass, Kelly S Bateman, Ronny van Aerle, Carly L Daniels, Mark van der Giezen, Stuart H Ross, Chantelle Hooper, Grant D Stentiford

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Corey C HoltInternational Centre of Excellence for Aquatic Animal Health Theme, Centre for Environment, Fisheries and Aquaculture Science (Cefas), Barrack Road, Weymouth, Dorset, DT4 8UB, United Kingdom. ch499@exeter.ac.uk.ORCID http://orcid.org/0000-0003-4222-6086
Michelle StoneInternational Centre of Excellence for Aquatic Animal Health Theme, Centre for Environment, Fisheries and Aquaculture Science (Cefas), Barrack Road, Weymouth, Dorset, DT4 8UB, United Kingdom.
David BassInternational Centre of Excellence for Aquatic Animal Health Theme, Centre for Environment, Fisheries and Aquaculture Science (Cefas), Barrack Road, Weymouth, Dorset, DT4 8UB, United Kingdom.ORCID http://orcid.org/0000-0002-9883-7823
Kelly S BatemanInternational Centre of Excellence for Aquatic Animal Health Theme, Centre for Environment, Fisheries and Aquaculture Science (Cefas), Barrack Road, Weymouth, Dorset, DT4 8UB, United Kingdom.
Ronny van AerleInternational Centre of Excellence for Aquatic Animal Health Theme, Centre for Environment, Fisheries and Aquaculture Science (Cefas), Barrack Road, Weymouth, Dorset, DT4 8UB, United Kingdom.ORCID http://orcid.org/0000-0002-2605-6518
Carly L DanielsThe National Lobster Hatchery, South Quay, Padstow, PL28 8BL, United Kingdom.ORCID http://orcid.org/0000-0003-3356-7671
Mark van der GiezenBiosciences, University of Exeter, Stocker Road, Exeter, EX4 4QD, United Kingdom.ORCID http://orcid.org/0000-0002-1033-1335
Stuart H RossInternational Centre of Excellence for Aquatic Animal Health Theme, Centre for Environment, Fisheries and Aquaculture Science (Cefas), Barrack Road, Weymouth, Dorset, DT4 8UB, United Kingdom.
Chantelle HooperInternational Centre of Excellence for Aquatic Animal Health Theme, Centre for Environment, Fisheries and Aquaculture Science (Cefas), Barrack Road, Weymouth, Dorset, DT4 8UB, United Kingdom.
Grant D StentifordInternational Centre of Excellence for Aquatic Animal Health Theme, Centre for Environment, Fisheries and Aquaculture Science (Cefas), Barrack Road, Weymouth, Dorset, DT4 8UB, United Kingdom. grant.stentiford@cefas.co.uk.
Centre for Environment, Fisheries and Aquaculture Science · GBThe National Lobster Hatchery · GBUniversity of Exeter · GB

Funding

Biotechnology and Biological Sciences Research Council BB/K003240/1Biotechnology and Biological Sciences Research Council BB/N013891/1Medical Research Council MR/M008924/1Wellcome TrustWellcome Trust WT101650MA
6 · The paper itself

Abstract

Viral diseases of crustaceans are increasingly recognised as challenges to shellfish farms and fisheries. Here we describe the first naturally-occurring virus reported in any clawed lobster species. Hypertrophied nuclei with emarginated chromatin, characteristic histopathological lesions of DNA virus infection, were observed within the hepatopancreatic epithelial cells of juvenile European lobsters (Homarus gammarus). Transmission electron microscopy revealed infection with a bacilliform virus containing a rod shaped nucleocapsid enveloped in an elliptical membrane. Assembly of PCR-free shotgun metagenomic sequencing produced a circular genome of 107,063 bp containing 97 open reading frames, the majority of which share sequence similarity with a virus infecting the black tiger shrimp: Penaeus monodon nudivirus (PmNV). Multiple phylogenetic analyses confirm the new virus to be a novel member of the Nudiviridae: Homarus gammarus nudivirus (HgNV). Evidence of occlusion body formation, characteristic of PmNV and its closest relatives, was not observed, questioning the horizontal transmission strategy of HgNV outside of the host. We discuss the potential impacts of HgNV on juvenile lobster growth and mortality and present HgNV-specific primers to serve as a diagnostic tool for monitoring the virus in wild and farmed lobster stocks.

Indexed as

AnimalsFish DiseasesGenome, ViralHepatopancreasMicroscopy, Electron, TransmissionNephropidaeNudiviridaePenaeidaePhylogenyShellfish

Identifiers

PMID31300678
PMCPMC6626001
OpenAlexW2961282620

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.