Evidence map›Paper›PMID 31299612›Full record

ArticleRedox biology2019

Oxygen-dependent bond formation with FIH regulates the activity of the client protein OTUB1.

Christina Pickel, Julia Günter, Amalia Ruiz-Serrano, Patrick Spielmann, Jacqueline-Alba Fabrizio, Witold Wolski, Daniel J Peet, Roland H Wenger, Carsten C Scholz

Open access · goldAbstract read
In one paragraph

Article in Redox biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.8field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Oxomer- and Reporter Gene-Based Analysis of FIH Activity in Cells.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  6. Article
  7. Evolution of hypoxia and hypoxia-inducible factor asparaginyl hydroxylase regulation in chronic kidney disease.Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association · 2023
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. The Deubiquitinase OTUB1 Is a Key Regulator of Energy Metabolism.International journal of molecular sciences · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Christina PickelInstitute of Physiology, University of Zurich, 8057, Zurich, Switzerland.
Julia GünterInstitute of Physiology, University of Zurich, 8057, Zurich, Switzerland; National Centre of Competence in Research 'Kidney.CH', Switzerland.
Amalia Ruiz-SerranoInstitute of Physiology, University of Zurich, 8057, Zurich, Switzerland.
Patrick SpielmannInstitute of Physiology, University of Zurich, 8057, Zurich, Switzerland.
Jacqueline-Alba FabrizioSchool of Biological Sciences, University of Adelaide, Adelaide, SA, 5005, Australia.
Witold WolskiFunctional Genomics Center Zurich, University of Zurich, 8057, Zurich, Switzerland.
Daniel J PeetSchool of Biological Sciences, University of Adelaide, Adelaide, SA, 5005, Australia.
Roland H WengerInstitute of Physiology, University of Zurich, 8057, Zurich, Switzerland; National Centre of Competence in Research 'Kidney.CH', Switzerland. Electronic address: roland.wenger@access.uzh.ch.
Carsten C ScholzInstitute of Physiology, University of Zurich, 8057, Zurich, Switzerland; National Centre of Competence in Research 'Kidney.CH', Switzerland. Electronic address: carsten.scholz@uzh.ch.
University of Zurich · CHUniversity of Adelaide · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein:protein interactions are the basis of molecular communication and are usually of transient non-covalent nature, while covalent interactions other than ubiquitination are rare. For cellular adaptations, the cellular oxygen and peroxide sensor factor inhibiting HIF (FIH) confers oxygen and oxidant stress sensitivity to the hypoxia inducible factor (HIF) by asparagine hydroxylation. We investigated whether FIH contributes to hypoxia adaptation also through other mechanisms and identified a hypoxia sensitive, likely covalent, bond formation by FIH with several client proteins, including the deubiquitinase ovarian tumor domain containing ubiquitin aldehyde binding protein 1 (OTUB1). Biochemical analyses were consistent with a co-translational amide bond formation between FIH and OTUB1, occurring within mammalian and bacterial cells but not between separately purified proteins. Bond formation is catalysed by FIH and highly dependent on oxygen availability in the cellular microenvironment. Within cells, a heterotrimeric complex is formed, consisting of two FIH and one covalently linked OTUB1. Complexation of OTUB1 by FIH regulates OTUB1 deubiquitinase activity. Our findings reveal an alternative mechanism for hypoxia adaptation with remarkably high oxygen sensitivity, mediated through covalent protein-protein interactions catalysed by an asparagine modifying dioxygenase.

Indexed as

Cell Line, TumorCysteine EndopeptidasesDeubiquitinating EnzymesHumansHypoxia-Inducible Factor 1Mass SpectrometryOxidation-ReductionOxygenCysteine EndopeptidasesDeubiquitinating EnzymesHypoxia-Inducible Factor 1OTUB1 protein, humanOxygenDeubiquitinaseHIFHydroxylaseHypoxiaOxygen sensorUbiquitin system

Identifiers

PMID31299612
PMCPMC6624438
OpenAlexW2955193090

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.