Evidence map›Paper›PMID 31296651›Full record

ArticleScience (New York, N.Y.)2019

A cytosine deaminase for programmable single-base RNA editing.

Omar O Abudayyeh, Jonathan S Gootenberg, Brian Franklin, Jeremy Koob, Max J Kellner, Alim Ladha, Julia Joung, Paul Kirchgatterer, David B T Cox, Feng Zhang

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 267 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
267citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

267 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  18. Article
  19. Evolution of Engineered ADAR-Based RNA Editing Systems.International journal of molecular sciences · 2026
    Review
  20. Article

207 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Omar O Abudayyeh *Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.ORCID 0000-0002-7979-3220
Jonathan S Gootenberg *Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.ORCID 0000-0003-2757-2175
Brian FranklinBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.ORCID 0000-0003-3848-2124
Jeremy KoobBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.ORCID 0000-0002-2777-532X
Max J KellnerBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.ORCID 0000-0002-5404-0628
Alim LadhaBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.ORCID 0000-0003-3945-7924
Julia JoungBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.ORCID 0000-0001-6656-5002
Paul KirchgattererBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.ORCID 0000-0002-5917-0819
David B T CoxBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Feng ZhangBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA. zhang@broadinstitute.org.ORCID 0000-0003-0178-7995

Funding

Medical Scientist Training ProgramT32GM007753 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALENSKY, LOREN DAVID · 1985 to 2021
$50.0M
Center for Cell CircuitsRM1HG006193 · NHGRI · BROAD INSTITUTE, INC. · PI BLAINEY, PAUL CLARK, HACOHEN, NIR · 2016 to 2020
$14.9M
Programmable RNA-targeting toolsR01HG009761 · NHGRI · BROAD INSTITUTE, INC. · PI ZHANG, FENG · 2017 to 2024
$7.5M
Exploration of Diverse Mobile Genetic Elements for Precision Genome ManipulationDP1HL141201 · NHLBI · BROAD INSTITUTE, INC. · PI ZHANG, FENG · 2017 to 2021
$6.2M
Massively-parallel functional interrogation of psychiatric geneticsR01MH110049 · NIMH · BROAD INSTITUTE, INC. · PI ZHANG, FENG · 2015 to 2019
$5.5M
Probing Neuropsychiatric Diseases Using Targeted Epigenome and Genome EngineeringDP1MH100706 · NIMH · BROAD INSTITUTE, INC. · PI ZHANG, FENG · 2012 to 2016
$4.3M
Characterization of a novel RNA-guided endoRNAse and applications towards genome-wide screening for non-coding RNA roles in melanoma resistanceF30CA210382 · NCI · HARVARD MEDICAL SCHOOL · PI ABUDAYYEH, OMAR O · 2016 to 2018
$78k
Decoding the Function of Adult Neurogenesis: From Neural Circuits to BehaviorF31NS059160 · NINDS · STANFORD UNIVERSITY · PI ZHANG, FENG · 2007 to 2008
$74k
Howard Hughes Medical InstituteNCI NIH HHS F30 CA210382NHGRI NIH HHS R01 HG009761NHGRI NIH HHS RM1 HG006193NHLBI NIH HHS DP1 HL141201NIGMS NIH HHS T32 GM007753NIMH NIH HHS DP1 MH100706NIMH NIH HHS R01 MH110049NINDS NIH HHS F31 NS059160
6 · The paper itself

Abstract

Programmable RNA editing enables reversible recoding of RNA information for research and disease treatment. Previously, we developed a programmable adenosine-to-inosine (A-to-I) RNA editing approach by fusing catalytically inactivate RNA-targeting CRISPR-Cas13 (dCas13) with the adenine deaminase domain of ADAR2. Here, we report a cytidine-to-uridine (C-to-U) RNA editor, referred to as RNA Editing for Specific C-to-U Exchange (RESCUE), by directly evolving ADAR2 into a cytidine deaminase. RESCUE doubles the number of mutations targetable by RNA editing and enables modulation of phosphosignaling-relevant residues. We apply RESCUE to drive β-catenin activation and cellular growth. Furthermore, RESCUE retains A-to-I editing activity, enabling multiplexed C-to-U and A-to-I editing through the use of tailored guide RNAs.

Indexed as

RNA EditingAdenosineAdenosine Deaminasebeta CateninCytidineCytosine DeaminaseHEK293 CellsHumansInosineProtein DomainsProtein EngineeringRNA-Binding ProteinsUridineADARB1 protein, humanAdenosineAdenosine Deaminasebeta CateninCTNNB1 protein, humanCytidineCytosine DeaminaseInosineRNA-Binding ProteinsUridine

Identifiers

PMID31296651
PMCPMC6956565

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.