Evidence map›Paper›PMID 31295325›Full record

ArticlePLoS pathogens2019

Full atomistic model of prion structure and conversion.

Giovanni Spagnolli, Marta Rigoli, Simone Orioli, Alejandro M Sevillano, Pietro Faccioli, Holger Wille, Emiliano Biasini, Jesús R Requena

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
7.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 116 citations in OpenAlex.

  1. Article
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  8. Protein Fold Usages in Ribosomes: Another Glance to the Past.International journal of molecular sciences · 2024
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  17. Probing the origin of prion protein misfolding via reconstruction of ancestral proteins.Protein science : a publication of the Protein Society · 2022
    Article
  18. Article
  19. Article
  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 4 countries.

Giovanni SpagnolliDepartment of Cellular, Computational and Integrative Biology (CIBIO)-University of Trento, Povo TN, ITALY.ORCID 0000-0002-0578-0558
Marta RigoliDepartment of Cellular, Computational and Integrative Biology (CIBIO)-University of Trento, Povo TN, ITALY.ORCID 0000-0001-7448-1896
Simone OrioliDepartment of Physics, Povo, Trento TN, ITALY.
Alejandro M SevillanoDepartment of Pathology-University of California-San Diego, San Diego, California, United States of America.ORCID 0000-0002-2107-2375
Pietro FaccioliDepartment of Physics, Povo, Trento TN, ITALY.
Holger WilleDepartment of Biochemistry and Centre for Prions and Protein Folding Diseases-University of Alberta, Edmonton (AB), CANADA.ORCID 0000-0001-5102-8706
Emiliano BiasiniDepartment of Cellular, Computational and Integrative Biology (CIBIO)-University of Trento, Povo TN, ITALY.
Jesús R RequenaCIMUS Biomedical Research Institute & Department of Medical Sciences, University of Santiago de Compostela-IDIS, Santiago, SPAIN.ORCID 0000-0003-1954-4975
University of Trento · ITIstituto Nazionale di Fisica Nucleare, Trento Institute for Fundamental Physics And Applications · ITUniversidade de Santiago de Compostela · ESUniversity of Alberta · CAUniversity of San Diego · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Prions are unusual protein assemblies that propagate their conformationally-encoded information in absence of nucleic acids. The first prion identified, the scrapie isoform (PrPSc) of the cellular prion protein (PrPC), caused epidemic and epizootic episodes [1]. Most aggregates of other misfolding-prone proteins are amyloids, often arranged in a Parallel-In-Register-β-Sheet (PIRIBS) [2] or β-solenoid conformations [3]. Similar folding models have also been proposed for PrPSc, although none of these have been confirmed experimentally. Recent cryo-electron microscopy (cryo-EM) and X-ray fiber-diffraction studies provided evidence that PrPSc is structured as a 4-rung β-solenoid (4RβS) [4, 5]. Here, we combined different experimental data and computational techniques to build the first physically-plausible, atomic resolution model of mouse PrPSc, based on the 4RβS architecture. The stability of this new PrPSc model, as assessed by Molecular Dynamics (MD) simulations, was found to be comparable to that of the prion forming domain of Het-s, a naturally-occurring β-solenoid. Importantly, the 4RβS arrangement allowed the first simulation of the sequence of events underlying PrPC conversion into PrPSc. This study provides the most updated, experimentally-driven and physically-coherent model of PrPSc, together with an unprecedented reconstruction of the mechanism underlying the self-catalytic propagation of prions.

Indexed as

AnimalsCryoelectron MicroscopyMiceModels, MolecularMolecular Dynamics SimulationPrionsProtein ConformationProtein Structure, QuaternaryPrPC ProteinsPrPSc ProteinsPrionsPrPC ProteinsPrPSc Proteins

Identifiers

PMID31295325
PMCPMC6622554
OpenAlexW2960300103

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.