Evidence map›Paper›PMID 31294213›Full record

ArticleAIMS microbiology2018

Metatranscriptomics profile of the gill microbial community during

Inês Barros, Hugo Froufe, George Marnellos, Conceição Egas, Jennifer Delaney, Michele Clamp, Ricardo Serrão Santos, Raul Bettencourt

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in AIMS microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 5 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Inês BarrosDepartment of Oceanography and Fisheries, University of the Azores, 9901-862 Horta, Portugal.
Hugo FroufeNext Generation Sequencing Unit-BIOCANT; Parque Tecnológico de Cantanhede, Núcleo 04, Lote 8, 3060-197 Cantanhede, Portugal.
George MarnellosHarvard University, Informatics and Scientific Applications, 38 Oxford Street, Cambridge, MA 02138-2020, United States.
Conceição EgasNext Generation Sequencing Unit-BIOCANT; Parque Tecnológico de Cantanhede, Núcleo 04, Lote 8, 3060-197 Cantanhede, Portugal.
Jennifer DelaneyHarvard University, Informatics and Scientific Applications, 38 Oxford Street, Cambridge, MA 02138-2020, United States.
Michele ClampHarvard University, Biological Laboratories, Room 3085, 16 Divinity Avenue, Cambridge, MA 02138-2020, United States.
Ricardo Serrão SantosDepartment of Oceanography and Fisheries, University of the Azores, 9901-862 Horta, Portugal.
Raul BettencourtDepartment of Oceanography and Fisheries, University of the Azores, 9901-862 Horta, Portugal.
Harvard University · USUniversidade dos Açores · PTBiocant · PT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe deep-sea mussels

resultsThe metatranscriptome of

conclusionsGill metagenomics analyses highlighted microbial diversity shifts and a clear pattern of varying mRNA transcript abundancies and expression during acclimatization to aquarium conditions which indicate change in bacterial community activity. This approach holds potential for the discovery of new host-symbiont associations, evidencing new functional transcripts and a clearer picture of methane metabolism during loss of endosymbionts. Towards the end of acclimatization, we observed trends in three major functional subsystems, as evidenced by an increment of transcripts related to genetic information processes; the decrease of chaperone and folding catalysts and oxidative phosphorylation transcripts; but no change in transcripts of gluconeogenesis and co-factors-vitamins.

Indexed as

Bathymodiolus azoricushost-microbe interactionshydrothermal ventlong term acclimatizationmetatranscriptomeRNA-seqsymbionts

Identifiers

PMID31294213
PMCPMC6604929
OpenAlexW2789851918

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.