Evidence map›Paper›PMID 31293559›Full record

ArticleFrontiers in microbiology2019

Fourier-Transform InfraRed Spectroscopy Can Quickly Type Gram-Negative Bacilli Responsible for Hospital Outbreaks.

Daniel Martak, Benoît Valot, Marlène Sauget, Pascal Cholley, Michelle Thouverez, Xavier Bertrand, Didier Hocquet

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed.

  1. Article
  2. FTIR typing of the emerging NDM-14-producingJournal of clinical microbiology · 2026
    Article
  3. A standardized workflow for typing S. marcescens outbreaks using FT-IR spectroscopy.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2026
    Article
  4. Application of FT-IR spectroscopy using the IR BiotyperEuropean journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Evaluation of IR BIOTYPERAntimicrobial resistance and infection control · 2025
    Article
  14. Article
  15. Article
  16. Evaluation of biofilm formation, antimicrobial pattern, and typing of Stenotrophomonas maltophilia isolated from clinical sources in Brazil.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2025
    Article
  17. Article
  18. Article
  19. Article
  20. Phenotypical and Molecular Characterization ofLife (Basel, Switzerland) · 2025
    Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Daniel MartakLaboratoire d'Hygiène Hospitalière, Centre Hospitalier Régional Universitaire, Besançon, France.
Benoît ValotUMR 6249, Laboratoire Chrono-Environnement, Centre National de la Recherche Scientifique-Université de Franche-Comté, Besançon, France.
Marlène SaugetLaboratoire d'Hygiène Hospitalière, Centre Hospitalier Régional Universitaire, Besançon, France.
Pascal CholleyLaboratoire d'Hygiène Hospitalière, Centre Hospitalier Régional Universitaire, Besançon, France.
Michelle ThouverezLaboratoire d'Hygiène Hospitalière, Centre Hospitalier Régional Universitaire, Besançon, France.
Xavier BertrandLaboratoire d'Hygiène Hospitalière, Centre Hospitalier Régional Universitaire, Besançon, France.
Didier HocquetLaboratoire d'Hygiène Hospitalière, Centre Hospitalier Régional Universitaire, Besançon, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The typing of epidemic bacterial pathogens in hospitals relies on DNA-based, expensive, and time-consuming techniques, that are often limited to retrospective studies. However, the quick identification of epidemic pathogens in the routine of the microbiology laboratories would expedite infection control procedures that limit the contamination of new patients. IR Biotyper (Bruker Daltonics GmbH) is a new typing machine based on Fourier-transform infrared (FTIR) spectroscopy which generates spectra, aiming at typing the micro-organisms within 3 h. This technique discriminates the isolates by exploring the differences of the surface cell polysaccharides. In this work, we evaluated the ability of the FTIR spectroscopy to recognize Gram-negative bacilli clones responsible for hospital outbreaks. Isolates of

Indexed as

bacterial typingFourier-transform infrared spectroscopyFTIRGram-negative bacillihospital outbreak

Identifiers

PMID31293559
PMCPMC6606786

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.