Evidence map›Paper›PMID 31292847›Full record

ArticleJournal of biomolecular NMR2019

Reaching the sparse-sampling limit for reconstructing a single peak in a 2D NMR spectrum using iterated maps.

Robert L Blum, Jared Rovny, J Patrick Loria, Sean E Barrett

Abstract read
In one paragraph

Article in Journal of biomolecular NMR, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Evaluating metrics of spectral quality in nonuniform sampling.Journal of magnetic resonance open · 2025
    Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Robert L BlumDepartment of Physics, Yale University, 217 Prospect St., New Haven, CT, 06511, USA.ORCID http://orcid.org/0000-0002-9205-9960
Jared RovnyDepartment of Physics, Yale University, 217 Prospect St., New Haven, CT, 06511, USA.ORCID http://orcid.org/0000-0002-5547-0128
J Patrick LoriaDepartment of Chemistry, Yale University, 225 Prospect St., New Haven, CT, 06511, USA.ORCID http://orcid.org/0000-0002-4824-9089
Sean E BarrettDepartment of Physics, Yale University, 217 Prospect St., New Haven, CT, 06511, USA. sean.barrett@yale.edu.ORCID http://orcid.org/0000-0002-0498-2027

Funding

Mechanism of catalytic regulation and active site loop motions in related protein tyrosine phosphatasesR01GM112781 · NIGMS · YALE UNIVERSITY · PI LORIA, JOSEPH P · 2015 to 2024
$2.8M
Division of Graduate Education 1122492Division of Materials Research 1310274Division of Materials Research 1610313Division of Molecular and Cellular Biosciences 1615415NIGMS NIH HHS 112781NIGMS NIH HHS R01 GM112781
6 · The paper itself

Abstract

Many of the ubiquitous experiments of biomolecular NMR, including [Formula: see text], [Formula: see text], and CEST, involve acquiring repeated 2D spectra under slightly different conditions. Such experiments are amenable to acceleration using non-uniform sampling spectral reconstruction methods that take advantage of prior information. We previously developed one such technique, an iterated maps method (DiffMap) that we successfully applied to 2D NMR spectra, including [Formula: see text] relaxation dispersion data. In that prior work, we took a top-down approach to reconstructing the 2D spectrum with a minimal number of sparse samples, reaching an undersampling fraction that appeared to leave some room for improvement. In this study, we develop an in-depth understanding of the action of the DiffMap algorithm, identifying the factors that cause reconstruction errors for different undersampling fractions. This improved understanding allows us to formulate a bottom-up approach to finding the lowest number of sparse samples required to accurately reconstruct individual spectral features with DiffMap. We also discuss the difficulty of extending this method to reconstructing many peaks at once, and suggest a way forward.

Indexed as

AlgorithmsNuclear Magnetic Resonance, BiomolecularSample SizeSpecimen HandlingDifference mapDiffMapNonuniform samplingReconstructionSparse sampling

Identifiers

PMID31292847
PMCPMC7384587

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.