Evidence map›Paper›PMID 31292434›Full record

ArticleNature communications2019

Time series modeling of cell cycle exit identifies Brd4 dependent regulation of cerebellar neurogenesis.

Clara Penas, Marie E Maloof, Vasileios Stathias, Jun Long, Sze Kiat Tan, Jose Mier, Yin Fang, Camilo Valdes, Jezabel Rodriguez-Blanco, Cheng-Ming Chiang and 6 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 30 citations in OpenAlex.

  1. Review
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  7. The Journal of neuroscience : the official journal of the Society for Neuroscience · 2023
    Article
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  16. Role of BET Proteins in Inflammation and CNS Diseases.Frontiers in molecular biosciences · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 2 countries.

Clara PenasDepartment of Psychiatry and Behavioral Sciences, Center for Therapeutic Innovation, Sylvester Comprehensive Cancer Center, Miami Project to Cure Paralysis, University of Miami Miller School of Medicine, Miami, FL, 33136, USA.
Marie E MaloofDepartment of Psychiatry and Behavioral Sciences, Center for Therapeutic Innovation, Sylvester Comprehensive Cancer Center, Miami Project to Cure Paralysis, University of Miami Miller School of Medicine, Miami, FL, 33136, USA.ORCID http://orcid.org/0000-0001-9320-5918
Vasileios StathiasDepartment of Psychiatry and Behavioral Sciences, Center for Therapeutic Innovation, Sylvester Comprehensive Cancer Center, Miami Project to Cure Paralysis, University of Miami Miller School of Medicine, Miami, FL, 33136, USA.
Jun LongDepartment of Surgery, University of Miami Miller School of Medicine, Miami, FL, 33136, USA.
Sze Kiat TanDepartment of Psychiatry and Behavioral Sciences, Center for Therapeutic Innovation, Sylvester Comprehensive Cancer Center, Miami Project to Cure Paralysis, University of Miami Miller School of Medicine, Miami, FL, 33136, USA.ORCID http://orcid.org/0000-0001-9653-555X
Jose MierDepartment of Neurosurgery, Miami Project to Cure Paralysis, University of Miami Miller School of Medicine, Miami, FL, 33136, USA.
Yin FangLaboratory of Development Neurobiology, The Rockefeller University, New York, NY, 10065, USA.
Camilo ValdesComputing and Information Sciences, Florida International University, Miami, FL, 33199, USA.
Jezabel Rodriguez-BlancoDepartment of Surgery, University of Miami Miller School of Medicine, Miami, FL, 33136, USA.
Cheng-Ming ChiangSimmons Comprehensive Cancer Center, Department of Biochemistry and Department of Pharmacology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
David J RobbinsDepartment of Surgery, University of Miami Miller School of Medicine, Miami, FL, 33136, USA.
Daniel J LieblDepartment of Neurosurgery, Miami Project to Cure Paralysis, University of Miami Miller School of Medicine, Miami, FL, 33136, USA.
Jae K LeeDepartment of Neurosurgery, Miami Project to Cure Paralysis, University of Miami Miller School of Medicine, Miami, FL, 33136, USA.
Mary E HattenLaboratory of Development Neurobiology, The Rockefeller University, New York, NY, 10065, USA.
Jennifer ClarkeDepartment of Statistics, University of Nebraska, Lincoln, NE, 68588, USA.
Nagi G AyadDepartment of Psychiatry and Behavioral Sciences, Center for Therapeutic Innovation, Sylvester Comprehensive Cancer Center, Miami Project to Cure Paralysis, University of Miami Miller School of Medicine, Miami, FL, 33136, USA. nayad@miami.edu.
University of Miami · USRockefeller University · USFlorida International University · USThe University of Texas Southwestern Medical Center · USUniversitat Autònoma de Barcelona · ESUniversity of Nebraska–Lincoln · US

Funding

E2-Cellular Complexes in HPV Chromatin TranscriptionR01CA103867 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI CHIANG, CHENG-MING · 2004 to 2017
$4.0M
The Anaphase Promoting Complex and Cell Cycle ExitR01NS067289 · NINDS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI AYAD, NAGI G · 2010 to 2014
$2.3M
Epigenetic and Kinase Pathway Interactions in MedulloblastomaR56NS102590 · NINDS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI AYAD, NAGI G · 2017 to 2017
$384k
NCI NIH HHS R01 CA103867NINDS NIH HHS R01 NS067289NINDS NIH HHS R56 NS102590
6 · The paper itself

Abstract

Cerebellar neuronal progenitors undergo a series of divisions before irreversibly exiting the cell cycle and differentiating into neurons. Dysfunction of this process underlies many neurological diseases including ataxia and the most common pediatric brain tumor, medulloblastoma. To better define the pathways controlling the most abundant neuronal cells in the mammalian cerebellum, cerebellar granule cell progenitors (GCPs), we performed RNA-sequencing of GCPs exiting the cell cycle. Time-series modeling of GCP cell cycle exit identified downregulation of activity of the epigenetic reader protein Brd4. Brd4 binding to the Gli1 locus is controlled by Casein Kinase 1δ (CK1 δ)-dependent phosphorylation during GCP proliferation, and decreases during GCP cell cycle exit. Importantly, conditional deletion of Brd4 in vivo in the developing cerebellum induces cerebellar morphological deficits and ataxia. These studies define an essential role for Brd4 in cerebellar granule cell neurogenesis and are critical for designing clinical trials utilizing Brd4 inhibitors in neurological indications.

Indexed as

AnimalsAnimals, NewbornBromodomain Containing ProteinsCasein Kinase IdeltaCell CycleCell DifferentiationCell ProliferationCerebellar AtaxiaCerebellar CortexDisease Models, AnimalDown-RegulationHumansMiceMice, KnockoutNeural Stem CellsNeurogenesisBrd4 protein, mouseBromodomain Containing ProteinsCasein Kinase IdeltaGli1 protein, mouseNuclear ProteinsTranscription FactorsZinc Finger Protein GLI1

Identifiers

PMID31292434
PMCPMC6620341
OpenAlexW2956769497

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.