Evidence map›Paper›PMID 31292254›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

The dynamic switch mechanism that leads to activation of LRRK2 is embedded in the DFGψ motif in the kinase domain.

Sven H Schmidt, Matthias J Knape, Daniela Boassa, Natascha Mumdey, Alexandr P Kornev, Mark H Ellisman, Susan S Taylor, Friedrich W Herberg

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
8.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 85 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Calculation of centralities in protein kinase A.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  17. Mucosal Immunity and the Gut-Microbiota-Brain-Axis in Neuroimmune Disease.International journal of molecular sciences · 2022
    Review
  18. Article
  19. LRRK2 and Proteostasis in Parkinson's Disease.International journal of molecular sciences · 2022
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Sven H SchmidtDepartment of Biochemistry, University of Kassel, 34132 Kassel, Germany.
Matthias J KnapeDepartment of Biochemistry, University of Kassel, 34132 Kassel, Germany.
Daniela BoassaNational Center for Microscopy and Imaging Research, University of California San Diego, La Jolla, CA 92093.
Natascha MumdeyDepartment of Biochemistry, University of Kassel, 34132 Kassel, Germany.
Alexandr P KornevDepartment of Pharmacology, University of California San Diego, La Jolla, CA 92093.ORCID 0000-0002-1543-3795
Mark H EllismanNational Center for Microscopy and Imaging Research, University of California San Diego, La Jolla, CA 92093.
Susan S TaylorDepartment of Pharmacology, University of California San Diego, La Jolla, CA 92093 staylor@ucsd.edu herberg@uni-kassel.de.
Friedrich W HerbergDepartment of Biochemistry, University of Kassel, 34132 Kassel, Germany; staylor@ucsd.edu herberg@uni-kassel.de.
University of California San Diego · USUniversity of Kassel · DE

Funding

IVEM and Image Analysis ResourceP41GM103412 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ELLISMAN, MARK H · 2012 to 2019
$17.9M
NIGMS NIH HHS P41 GM103412
6 · The paper itself

Abstract

Leucine-rich repeat kinase 2 (LRRK2) is a large multidomain protein, and LRRK2 mutants are recognized risk factors for Parkinson's disease (PD). Although the precise mechanisms that control LRRK2 regulation and function are unclear, the importance of the kinase domain is strongly implicated, since 2 of the 5 most common familial LRRK2 mutations (G2019S and I2020T) are localized to the conserved DFGψ motif in the kinase core, and kinase inhibitors are under development. Combining the concept of regulatory (R) and catalytic (C) spines with kinetic and cell-based assays, we discovered a major regulatory mechanism embedded within the kinase domain and show that the DFG motif serves as a conformational switch that drives LRRK2 activation. LRRK2 is quite unusual in that the highly conserved Phe in the DFGψ motif, which is 1 of the 4 R-spine residues, is replaced with tyrosine (DY

Indexed as

Catalytic DomainMolecular Dynamics SimulationHEK293 CellsHumansLeucine-Rich Repeat Serine-Threonine Protein Kinase-2Mutation, MissenseLeucine-Rich Repeat Serine-Threonine Protein Kinase-2LRRK2 protein, humanDFG motifkinase architectureLeucine-rich repeat kinase 2LRRK2Parkinson’s disease

Identifiers

PMID31292254
PMCPMC6660771
OpenAlexW2960012086

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.