Evidence map›Paper›PMID 31292210›Full record

ArticleGenetics2019

Phenotypic and Genotypic Consequences of CRISPR/Cas9 Editing of the Replication Origins in the rDNA of

Joseph C Sanchez, Anja Ollodart, Christopher R L Large, Courtnee Clough, Gina M Alvino, Mitsuhiro Tsuchiya, Matthew Crane, Elizabeth X Kwan, Matt Kaeberlein, Maitreya J Dunham and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

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  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Joseph C Sanchez *Department of Genome Sciences, University of Washington, Seattle, Washington 98195.ORCID 0000-00002-2444-1834
Anja OllodartDepartment of Genome Sciences, University of Washington, Seattle, Washington 98195.ORCID 0000-0002-6329-9463
Christopher R L LargeDepartment of Genome Sciences, University of Washington, Seattle, Washington 98195.ORCID 0000-0002-5732-970X
Courtnee CloughDepartment of Genome Sciences, University of Washington, Seattle, Washington 98195.ORCID 0000-0002-7859-7252
Gina M AlvinoDepartment of Genome Sciences, University of Washington, Seattle, Washington 98195.
Mitsuhiro TsuchiyaDepartment of Pathology, University of Washington, Seattle, Washington 98195.
Matthew CraneDepartment of Pathology, University of Washington, Seattle, Washington 98195.
Elizabeth X KwanDepartment of Genome Sciences, University of Washington, Seattle, Washington 98195.
Matt KaeberleinDepartment of Genome Sciences, University of Washington, Seattle, Washington 98195.ORCID 0000-0002-1311-3421
Maitreya J DunhamDepartment of Genome Sciences, University of Washington, Seattle, Washington 98195.ORCID 0000-0001-9944-2666
M K RaghuramanDepartment of Genome Sciences, University of Washington, Seattle, Washington 98195.ORCID 0000-0003-2382-3707
Bonita J Brewer *Department of Genome Sciences, University of Washington, Seattle, Washington 98195 bbrewer@gs.washington.edu.ORCID 0000-0001-8782-0471
University of Washington · US

Funding

SPECIFICITY OF OXYGEN DNA DAMAGE AND MUTAGENESISP01AG001751 · NIA · UNIVERSITY OF WASHINGTON · PI PRUSKY, GLEN THOMAS · 1985 to 2021
$29.6M
University of Washington Nathan Shock Center of Excellence in the Basic Biology of AgingP30AG013280 · NIA · UNIVERSITY OF WASHINGTON · PI Michael MacCoss · 1995 to 2026
$27.1M
INTERDISCIPLINARY TRAINING IN GENOMIC SCIENCEST32HG000035 · NHGRI · UNIVERSITY OF WASHINGTON · PI Bruce Colston Trapnell · 1995 to 2026
$24.2M
TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI YATES III, JOHN R · 2012 to 2021
$20.7M
GENETIC APPROACHES TO AGING RESEARCHT32AG000057 · NIA · UNIVERSITY OF WASHINGTON · PI RABINOVITCH, PETER S · 1985 to 2019
$14.2M
Choreography of Eukaryotic DNA ReplicationR35GM122497 · NIGMS · UNIVERSITY OF WASHINGTON · PI BONITA J BREWER · 2017 to 2026
$5.7M
Emergent properties of signaling network degradation that mediate homeostatic failure during agingR01AG056359 · NIA · UNIVERSITY OF WASHINGTON · PI KAEBERLEIN, MATT, VILLEN, JUDIT · 2017 to 2021
$2.9M
Howard Hughes Medical InstituteNHGRI NIH HHS T32 HG000035NIA NIH HHS P01 AG001751NIA NIH HHS P30 AG013280NIA NIH HHS R01 AG056359NIA NIH HHS T32 AG000057NIGMS NIH HHS P41 GM103533NIGMS NIH HHS R35 GM122497
6 · The paper itself

Abstract

The complex structure and repetitive nature of eukaryotic ribosomal DNA (rDNA) is a challenge for genome assembly, thus the consequences of sequence variation in rDNA remain unexplored. However, renewed interest in the role that rDNA variation may play in diverse cellular functions, aside from ribosome production, highlights the need for a method that would permit genetic manipulation of the rDNA. Here, we describe a clustered regularly interspaced short palindromic repeats (CRISPR)/Cas9-based strategy to edit the rDNA locus in the budding yeast

Indexed as

CRISPR-Cas SystemsReplication OriginChromosomes, FungalConsensus SequenceDNA, RibosomalGene EditingGenetic FitnessGenotypePhenotypeSaccharomyces cerevisiaeDNA, Ribosomalfitnessorigins of replicationrDNA copy numberreplicative life spanturbidostat

Identifiers

PMID31292210
PMCPMC6727806
OpenAlexW2957938624

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.