Evidence map›Paper›PMID 31291378›Full record

ArticlePloS one2019

Acute myeloid leukemia immunopeptidome reveals HLA presentation of mutated nucleophosmin.

Rupa Narayan, Niclas Olsson, Lisa E Wagar, Bruno C Medeiros, Everett Meyer, Debra Czerwinski, Michael S Khodadoust, Lichao Zhang, Liora Schultz, Mark M Davis and 2 more

Abstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
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  3. Review
  4. Article
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  6. A pan-cancer atlas of therapeutic T cell targets.bioRxiv : the preprint server for biology · 2025
    Article
  7. Article
  8. Review
  9. Review
  10. The Immunopeptidomics Ontology (ImPO).Database : the journal of biological databases and curation · 2024
    Article
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  12. Review
  13. Review
  14. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Rupa NarayanDepartment of Medicine, Division of Hematology, Stanford University, Stanford, CA, United States of America.ORCID 0000-0002-7104-1163
Niclas OlssonDepartment of Chemical and Systems Biology, Stanford University, Stanford, CA, United States of America.ORCID 0000-0002-9746-0542
Lisa E WagarDepartment of Microbiology & Immunology, Stanford University, Stanford, CA, United States of America.
Bruno C MedeirosDepartment of Medicine, Division of Hematology, Stanford University, Stanford, CA, United States of America.
Everett MeyerDepartment of Medicine, Division of Blood and Marrow Transplantation, Stanford University, Stanford, CA, United States of America.
Debra CzerwinskiDepartment of Medicine, Division of Oncology, Stanford University, Stanford, CA, United States of America.
Michael S KhodadoustDepartment of Medicine, Division of Oncology, Stanford University, Stanford, CA, United States of America.
Lichao ZhangDepartment of Chemical and Systems Biology, Stanford University, Stanford, CA, United States of America.
Liora SchultzDepartment of Pediatrics, Division of Hematology/Oncology, Stanford University, Stanford, CA, United States of America.
Mark M DavisDepartment of Microbiology & Immunology, Stanford University, Stanford, CA, United States of America.
Joshua E EliasDepartment of Chemical and Systems Biology, Stanford University, Stanford, CA, United States of America.
Ron LevyDepartment of Medicine, Division of Oncology, Stanford University, Stanford, CA, United States of America.

Funding

Translational Oncology Research Program (Project-005)P30CA124435 · NCI · STANFORD UNIVERSITY · PI Vittorio Sebastiano · 2007 to 2026
$71.4M
Stanford Center for Clinical & Translational Education and Research (Spectrum)UL1TR003142 · NCATS · STANFORD UNIVERSITY · PI O'HARA, RUTH M · 2019 to 2023
$45.0M
Spectrum Stanford Center for clinical and Translational Research and EducationUL1TR001085 · NCATS · STANFORD UNIVERSITY · PI CULLEN, MARK RICHARD, GREENBERG, HARRY BERNARD · 2013 to 2017
$37.1M
Enhancing Cancer Immunotherapy: Targeting the Tumor and Targeting the HostR35CA197353 · NCI · STANFORD UNIVERSITY · PI LEVY, RONALD · 2016 to 2022
$6.1M
Spectrum Stanford Center for Clinical and Translational Research and EducationTL1TR001084 · NCATS · STANFORD UNIVERSITY · PI CULLEN, MARK RICHARD, GREENBERG, HARRY BERNARD · 2013 to 2017
$1.1M
NCATS NIH HHS TL1 TR001084NCATS NIH HHS UL1 TR001085NCATS NIH HHS UL1 TR003142NCI NIH HHS P30 CA124435NCI NIH HHS R35 CA197353
6 · The paper itself

Abstract

Somatic mutations in cancer are a potential source of cancer specific neoantigens. Acute myeloid leukemia (AML) has common recurrent mutations shared between patients in addition to private mutations specific to individuals. We hypothesized that neoantigens derived from recurrent shared mutations would be attractive targets for future immunotherapeutic approaches. Here we sought to study the HLA Class I and II immunopeptidome of thirteen primary AML tumor samples and two AML cell lines (OCI-AML3 and MV4-11) using mass spectrometry to evaluate for endogenous mutation-bearing HLA ligands from common shared AML mutations. We identified two endogenous, mutation-bearing HLA Class I ligands from nucleophosmin (NPM1). The ligands, AVEEVSLRK from two patient samples and C(cys)LAVEEVSL from OCI-AML3, are predicted to bind the common HLA haplotypes, HLA-A*03:01 and HLA-A*02:01 respectively. Since NPM1 is mutated in approximately one-third of patients with AML, the finding of endogenous HLA ligands from mutated NPM1 supports future studies evaluating immunotherapeutic approaches against this shared target, for this subset of patients with AML.

Indexed as

Antigen PresentationAntigens, NeoplasmDatasets as TopicFrameshift MutationHLA AntigensHumansLeukemia, Myeloid, AcuteNuclear ProteinsNucleophosminProteomicsAntigens, NeoplasmHLA AntigensNPM1 protein, humanNuclear ProteinsNucleophosmin

Identifiers

PMID31291378
PMCPMC6619824

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.